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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6l7iF_

Fold library idPDB HeaderMoleculeTitle
c6l7iF_2.90PDB header: toxin/protein transportChain: F: PDB Molecule: tcdb1;


Added to library: Sat Apr 3 09:14:39 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FSVTELSLPKGGGAITGMGEALTPAGPDGMAALSLPLPISAGRGYAPSLTLNYNSGTGNSPFGLGWDCGV
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Known secondary structure (DSSP)











S



S





TT








SS




TT

TTS


 .........80.........90.........100.........110.........120.........130.........140
Sequence MAIRRRTSTGVPNYDETDTFLGPEGEVLVVALNQADIRSESSLQGINLGATFTVTCYRSRLESHFNRLEY
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Known secondary structure (DSSP)


SSSS


STT


TTS
B
B

B
TTSB
SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence WQPQTTGATDFWLIYSPDGQVHLLGKNPQARISNPLNVNQTAQWLLEASISSHSEQIYYQYRAEDEAGCE
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Known secondary structure (DSSP)
BSSTTS


TBS
S
SGGG
SSSTT

TTS




S

 .........220.........230.........240.........250.........260.........270.........280
Sequence TDELAAHPSATVQRYLQTVHYGNLTASDVFPTLNGDDPLKSGWMFCLVFDYGERKNSLSEMPLFKATGNW
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Known secondary structure (DSSP) STT



SS

SS
TTTS
S
TTTS
SSSS

STTS


SS
SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence LCRKDRFSRYEYGFELRTRRLCRQILMFHRLQTLSGQAKGDDEPALVSRLILDYDENAMVSTLVSVRRVG
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Known secondary structure (DSSP)


S



B
TTSS
B







TTT
SS
S


SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence HEDNNTVTALPPLELAYQPFEPEQTALWQSMDVLANFNTIQRWQLLDLKGEGVPGILYQDRNGWWYRSAQ
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Known secondary structure (DSSP) TTT






TTTS

TTTT

TTTT
SSS
SS

SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence RQAGEEMNAVTWGKMQLLPITPAVQDNASLMDINGDGQLDWVITGPGLRGYHSQHPDGSWTRFTPLHALP
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Known secondary structure (DSSP)

SS
TT




S


S

SS
SS
SSS

SS
B
TTS
B



S


 .........500.........510.........520.........530.........540.........550.........560
Sequence IEYSHPRAQLADLMGAGLSDLVLIGPKSVRLYVNNRDGFTEGRDVVQSGDITLPLPGADARKLVAFSDVL
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Known secondary structure (DSSP) GGGG
TT


SSSSS

SS
B
SSSB






TT




TTS
SS

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence GSGQAHLVEVSATQVTCWPNLGHGRFGQPIVLPGFSQSAASFNPDRVHLADLDGSGPADLIYVHADRLDI
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Known secondary structure (DSSP) SSSS

SS

TT


TT



SSS

GGG
SSSSSS

SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence FSNESGNGFAKPFTLSFPDGLRFDDTCQLQVADVQGLGVVSLILSVPHMAPHHWRCDLTNAKPWLLSETN
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Known secondary structure (DSSP)
B
TTS
B






TT



SS


SSSSS

SSS


SS
TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence NNMGANHTLHYRSSVQFWLDEKAAALATGQTPVCYLPFPVHTLWQTETEDEISGNKLVTTLRYAHGAWDG
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Known secondary structure (DSSP)
SSSTTTT




B

S

TTT

T
 .........780.........790.........800.........810.........820.........830.........840
Sequence REREFRGFGYVEQTDSHQLARTPPALTKSWYATGLPAVDNALSAGYWRGDKQAFAGFTPRFTLWKEGKDV
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Known secondary structure (DSSP) TTT






S
TTGGGSS


SS







TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence PLNLYWLNRALKGQPLRSELYGLDGSAQQQIPYTVTESRPQVRQLQDGATVSPVLWASVVESRSYHYERI
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Known secondary structure (DSSP)

TTTT
SSSTTTTS
S

SSS


TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence ISDPQCNQDITLSSDLFGQPLKQVSVQYPRRNKPTTNPYPDTLPDTLFASSYDDQQQLLRLTCRQSSWHH
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Known secondary structure (DSSP) SSS



TTS







SS

S
TTS
GGGTTTT

SSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LIGNELRVLGLPDGTRSDAFTYDAKQVPVDGLNLETLCAENSLIADDKPREYLNQQRTFYTDGKNQTPLK
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Known secondary structure (DSSP) TTTTSS
TT


TSTT
TTSTTS


SS
SS
BS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TPTRQALIAFTETAVLTESLLSAFDGGITPDELPGILTQAGYQQEPYLFPRTGENKVWVARQGYTDYGTE
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Known secondary structure (DSSP) S

TT
TTGGGG

SSS
TTTTT

SS

TT





T
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence AQFWRPVAQRNSLLTGKMTLKWDTHYCVITQTQDAAGLTVSANYDWRFLTPTQLTDINDNVHLITLDALG
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Known secondary structure (DSSP) TTTT
SSTTS



B
TTSSSB


SSS
TTTT
TT


TTS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence RPVTQRFWGIESGVATGYSSSEEKPFSPPNDIDTAINLTGPLPVAQCLVYAPDSWMPLFSQETFNTLTQE
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Known secondary structure (DSSP)
SSSSS

TTTS




SST

S

SSSGGGGS



TTS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence EQETLRDSRIITEDWRICALTRRRWLQSQKISTPLVKLLTNSIGLPPHNLTLTTDRYDRDSEQQIRQQVA
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Known secondary structure (DSSP) TTT
B
TTS
B


S

S




SSS
TT
TT

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence FSDGFGRLLQASVRHEAGEAWQRNQDGSLVTKVENTKTRWAVTGRTEYDNKGQTIRTYQPYFLNDWRYVS
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Known secondary structure (DSSP)
SSS

S
SSS
SSS

TTS


SSSS


 .........1410.........1420.........1430.........1440.........1450.
Sequence DDSARKEAYADTHIYDPIGREIRVITAKGWLRQSQYFPWFTVSEDENDTAA
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Known secondary structure (DSSP) SS

TTS

SSS

SS

TTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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