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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6l42A_

Fold library idPDB HeaderMoleculeTitle
c6l42A_3.40PDB header: viral proteinChain: A: PDB Molecule: rna polymerase;


Added to library: Sat May 16 08:31:41 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DQIYDRPGLPDLDVTVDATGVTVDIGAVPDSASSEAYKINHDFTFSGLSKTTDRRLSEVFPITHDGSDGM
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Known secondary structure (DSSP)

TTTSTTS


SS
S







S







S
TTTTTSS
SSS


SS
SS


SS


 .........80.........90.........100.........110.........120.........130.........140
Sequence TPDVIHTRLDGTIVVVEFTTTRSHNIGGLEAAYRTKIEKYRDPISRRVDIMENPRVFFGVIVVSSGGVLS
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Known secondary structure (DSSP)

S
TTS




STTTTTTSSS


SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NMPLTQDEAEELMYRFCIANEIYTKARSMDADIELQKSEEELEAISRALSFFSLFEPNIERVEGTFPNSE
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Known secondary structure (DSSP) SS




SS



TTS
TTTS




SSSSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence IEMLEQFLSTPADVDFITKTLKAKEVEAYADLCDSHYLKPEKTIQERLEINRCEAIDKTQDLLAGLHARS
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Known secondary structure (DSSP) TTSS


TT
SS


TS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NKQTSLNRGTVKLPPWLPKPSSESIDIKTDSGFGSLMDHGAYGELWAKCLLDVSLGNVEGVVSDPELDIA
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Known secondary structure (DSSP)


SS



SB
S









S

SSSSST









 .........360.........370.........380.........390.........400.........410.........420
Sequence DTPKEAKITYRRFKPALSSSARQEFSLQGLSPFLDVEDIGDFLTFNNLLADSRYGDESVQRAVSILLEKA
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Known secondary structure (DSSP)



GGG













TT


S
SSSS

S
SSST
 .........430.........440.........450.........460.........470.........480.........490
Sequence SAMQDTELTHALNDSFKRNLSSNVVQWSLWVSCLAQELASALKQHCRAGEFIIKKLKFWPIYVIIKPTKS
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Known secondary structure (DSSP) TSS
STTSTTTSSSSTS
S


SS




SSS



B

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence SSHIFYSLGIRKADVTRRLTGRVFSETIDAGEWELTEFKSLKTCKLTNLVNLPCTMLNSIAFWREKLGVA
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Known secondary structure (DSSP) SS

TTS


SS
B



SS
TT
STTTSGGGTTTT

 .........570.........580.........590.........600.........610.........620.........630
Sequence PWLVRKPCSELREQVGLTFLISLEDKSKTEEIITLTRYTQMEGFVSPPMLPKPQKMLGKLDGPLRTKLQV
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Known secondary structure (DSSP) TT





TT


TTTGGGTTTTGGGG

SSS



GGGGGG





SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence YLLRKHLDCMVRIASQPFSLIPREGRVEWGGTFHAISGRSTNLENMVNSWYIGYYKNKEESTELNALGEM
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Known secondary structure (DSSP) TTTS




SSS





SSS




TTSS




SB


 .........710.........720.........730.........740.........750.........760.........770
Sequence YKKIVEMEEDKPSSPEFLGWGDTDSPKKHEFSRSFLRAACSSLEREIAQRHGRQWKQNLEERVLREIGTK
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Known secondary structure (DSSP) TTSTTS
S
T




S

SS

SS


TTT
SSTTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence NILDLASMKATSNFSKDWELYSEVQTKEYHRSKLLEKMATLIEKGVMWYIDAVGQAWKAVLDDGCMRICL
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Known secondary structure (DSSP)

SS
S








GGG
BTTT
SS






SSTTT

STTSSTTT
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence FKKNQHGGLREIYVMDANARLVQFGVETMARCVCELSPHETVANPRLKNSIIENHGLKSARSLGPGSINI
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Known secondary structure (DSSP) B
SSSSS


TTTSTTSSS
SSSS
SGGGTTGGGSSTT

 .........920.........930.........940.........950.........960.........970.........980
Sequence NSSNDAKKWNQGHYTTKLALVLCWFMPAKFHRFIWAAISMFRRKKMMVDLRFLAHLSDPFREAMTDAFHG
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Known secondary structure (DSSP)

B

S
SSSS

S
SS
TTTTS



S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NREVSWMDKGRTYIKTETGMMQGILHFTSSLLHSCVQSFYKSYFVSKLKEGYMGESISGVVDVIEGSDDS
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Known secondary structure (DSSP) S


SSS
TTBS
S


SSSS
SSTS
BTTB





TT
B
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence AIMISIRPKSDMDEVRSRFFVANLLHSVKFLNPLFGIYSSEKSTVNTVYCVEYNSEFHFHRHLVRPTLRW
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Known secondary structure (DSSP)



SSTGGGSSSTTTT



S




BSS

SS

SS


S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IAASHQISETEALASRQEDYSNLLTQCLEGGASFSLTYLIQCAQLLHHYMLLGLCLHPLFGTFMGMLISD
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Known secondary structure (DSSP) TTS




SS
SSTT

TTTTTSSSSTTTTS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PDPALGFFLMDNPAFAGGAGFRFNLWRACKTTDLGRKYAYYFNEIYRALDATSGGTLSHSVMVYWGDRKK
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Known secondary structure (DSSP)

TTSS





STTTTSS
TTS
SSTTS



S

TT
SSSS

S

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence YQALLNRMGLPEDWVEQIDENPGVLYRRAANKKELLLKLAEKVHSPGVTSSLSKGHVVPRVVAAGVYLLS
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Known secondary structure (DSSP) TSS

SS

TTT

GGGTS

SSSTT






S
S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence RHCFFSSSIHGSTQKASLIKLLMMSSISAMKHGGSLNPNQERMLFPQAQEYDRVCTLLEEVEHVRERNIV
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Known secondary structure (DSSP) TTT

GGGG





STTTTTTTTSSSSSS















SS




S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RSRIDLFQEPVDLRCKAEDLVSEVWFGLKRTKLGPRLLKEEWDKLRASFAWLSTDPSETLRDGPFLSHVQ
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Known secondary structure (DSSP) SS
SS
S

STT

STTTTTTTSS
SSS











SSSTTTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence FRNFISLDNQERLESISILKHVLFMVLNGPYTEEYKLEMIIEAFSTLRTMTLCLLSNSILDQIERAQSGT
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Known secondary structure (DSSP) TTT



TTTTSS

GGGSTTT




S


TT



SSTT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LGGFSKPQKTFIRPGGGVGYKGKGVWTGVMEDTHVQILIDGDGTSNWLEEIRLSSDARLYDVIESIRRLC
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Known secondary structure (DSSP)


SB


TTT
S

TT



SSSS

S

S

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence DDLGINNRVASAYRGHCMVRLSGFKIKPASRTDGCPVRIMERGFRIRELQNPDEVKMRVRGDILNLSVTI
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Known secondary structure (DSSP) T
B

S




S

SSTTS
B
TTT

S


TTS







TT

TT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence QEGRVMNILSYRPRDTDISESAAAYLWSNRDLFSFGKKEPSCSWICLKTASVLLANDRKTQGIDNRAMGN
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Known secondary structure (DSSP) TT


STT

SS

TT
GGGSSSSSTTTTTTT



TTS


SS

S
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence IFRDCLEGSLRKQGLMRSKLTEMVEKNVVPLTTQELVDILEEDIDFSDVIAVELSEGSLDIESIFDGAPI
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Known secondary structure (DSSP)
S
SSGGGS


SS











TTSSSSS







SSS
STT




TT



 .........1830.........1840.........1850........
Sequence LWSVSYSSKYYHLTLMDQAAKEGCRGLRCMAAIREQVR
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SS confidence





































Known secondary structure (DSSP)






SS
TTT




S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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