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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6klcA_

Fold library idPDB HeaderMoleculeTitle
c6klcA_3.90PDB header: viral proteinChain: A: PDB Molecule: rna-directed rna polymerase l;


Added to library: Sat Mar 21 08:50:45 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MEEDIACVKDLVSKYLANNERLSRQKLAFLVQTEPRMLLMEGLKLLSLCIEVDSCNANGCEHNSEDKSVE
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Known secondary structure (DSSP)




ST


T


S


 .........80.........90.........100.........110.........120.........130.........140
Sequence RILHDHGVLTPSLCFVVPDGYKLTGNVLILLECFVRSSPANFEQKYVEDFKKLEQLKEDLKSVDINLIPL
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Known secondary structure (DSSP) TT



S





STT
SSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence IDGRTSFYNEQIPDWVNDKLRDTLFSLLKYAQESNSLFEESEYSRLCESLSMTVESLNALLDNRSNHYEE
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Known secondary structure (DSSP) SSS

SSS
TT
SS
TS



S


S




SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VIASCHQGINNKLTAHEVKLQIEEEYQVFRNRLRKGEIEGQFLKVEKNQLLNEFNNLYADKVAEKDSVEH
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Known secondary structure (DSSP) SSS





TTTTTSS
GGGB



SS
SS

S


 .........290.........300.........310.........320.........330.........340.........350
Sequence LTHQFKRASPILRFLYANISCQMQCWRSFLNKVKSMRILNKLLLIFDALILLASKHDQVDRLVSLESTKK
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Known secondary structure (DSSP) TTSSSSS



TS


T



SS

BTTTB
 .........360.........370.........380.........390.........400.........410.........420
Sequence DLKKWVERRQQVERSRTMQSFQKNQILNSIFQKTISKATTALRDVGISVDHYKIDMEVICPDGYIMDFDV
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Known secondary structure (DSSP)


SSTT

TTTTTTTT


TTSTT


 .........430.........440.........450.........460.........470.........480.........490
Sequence SGVTPTYIMGDVDLLKTTDLERLSSLSLALVNSMKTSSTVCKEAYCQEFSLGETEFQLIYQKTGECSKCY
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Known secondary structure (DSSP) TT







TTSSTT









SS
S

SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence AINDNRVGEVCSFYADPKRYFPAIFSAEVLQTTVSTMISWIEDCNELEEQLDKIRSLTKMILILILAHPS
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Known secondary structure (DSSP)
SSS



GGG
GGGSS
SSTT

SSTTSS
S

 .........570.........580.........590.........600.........610.........620.........630
Sequence KRSQKLLQNLRYFIMAYVSDYYHKDLIDKVREELITDVEFLLYRLLRTLMGLVLSEDVKSMMTNRFKFIL
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Known secondary structure (DSSP) SSB
BTTSGGGT




TTSSS

TT
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence NISYMCHFITKETPDRLTDQIKCFEKFLEPKVKFGHVSINPADTATEEELDDMVYNAKKFLSKGGCTSAK
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Known secondary structure (DSSP) TTS

S
S
T






SS

TTT


TTSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence GPSYKKPGVSKKYLSLLTSSFNNGSLFKFNKLTALAVSQLTEVFSRKGKHLLNKQDYEYKVQQAMSNLVL
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Known secondary structure (DSSP)


SS




TTTS


T

SS
S

T
 .........780.........790.........800.........810.........820.........830.........840
Sequence GSKQHKGDADEADLDEILLDGGASTYFNQLKETVEKIVDQYREPVTTAMLKNLCFYSQESPQSYNSVGPD
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Known secondary structure (DSSP) TS





S

S
SSTTTTS
TT


STTTS
S



S

SS

S
 .........850.........860.........870.........880.........890.........900.........910
Sequence TGRLKFSLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEALSSQLSGSCLNNEKEFENAILSMKLNVSMA
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Known secondary structure (DSSP) S
S
B

SSS

SSSSB
SS
TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence HVSYSMDHSKWGPMMCPFLFLTVLQNLIFLSIKGRDYLSTLLMWHMHKMVEIPFNVVSAMMKSFIKAQLG
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Known secondary structure (DSSP)


TTTTTT

T






SS
B


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence TKQSITEDFFYSNFQIGVVPSHISSILDMGQGILHNTSDFYALITERFINYAISCVCGGTIDAYTSSDDQ
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Known secondary structure (DSSP)




S





SS


TTTTT


SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ISLFDQTLTELLHRDPEEFRALMEFHYYMSDQLNKFVSPKSVIGRFVAEFKSRFFVWGDEVPLLTKFVAA
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Known secondary structure (DSSP)

TT



TT

SSTTSSSB


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ALHNIKCKEPHQLAETIDTIVDQSVANGVPVHLCNLIQIRTLSLLQYARYPIDPFLLNCETDVRDWVDGN
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Known secondary structure (DSSP) S


SS
TTS
TTT



TTTS

SS

S

SS

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence RSYRIMRQIEGLIPDACSKIRSMLRRLYNRLKTGQLHEEFTTNYLSSEHLSSLKNLCELLGVEPPSESDL
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Known secondary structure (DSSP) SSSSSTTS
T


SSSTTTSS



TTTST
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence EYSWLNLAAHHPLRMVIPTIVKTIQNKLSSIASGFVGLCRTLGSKCVRGPNKENLYIKSIQSLITGTQGI
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Known secondary structure (DSSP) T

TTSSS









TTSS

TTS

S
SS

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence ELLTNSIGVQYWRVPLSVVSYFRPLLWDYMCISLSTAIELGAWVLGDPGLNHIIHSLRRLYPSVFEKHII
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Known secondary structure (DSSP)


SSS





S







S
SGGGS



STTTTTS


 .........1410.........1420.........1430......
Sequence KFLDLCVALDVNCEALSLVSHIVHYIVLSSELRFSH
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Known secondary structure (DSSP)
STTSS
S
SSS








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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