PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6kj6D_

Fold library id	PDB Header	Molecule	Title
c6kj6D_	3.80	PDB header: transcription	Chain: D: PDB Molecule: dna-directed rna polymerase subunit beta';

Links to external resources
Added to library: Sat Jan 4 08:37:46 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E F D A I K I A L A S P D M I R S W S F G E V K K P E T I N Y R T F K P E R D G L F C A R I F G P V K D Y E C L C G K Y K R L K H R G V I C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
B
S S S
B
S S S T T
T T T S
S S T T
S S
S S
S S S
S S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E K C G V E V T Q T K V R R E R M G H I E L A S P T A H I W F L K S L P S R I G L L L D M P L R D I E R V L Y F E S Y V V I E G G M T N L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
B
T T S T T T
S T T T S S S S
S S S
-
G G G T T T T T T T S S
B T T B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R Q Q I L T E E Q Y L D A L E E F G D E F D A K M G A E A I Q A L L K S M D L E Q E T K R I K L N K P E W M I L T V L P V L P P D L R P F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
G G G T T T T S S S
G G G
S S
S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T S D L N D L Y R R V I N R N N R L K R L A P D I I V R N E K R M L Q E A V D A L L D N R P L K S L A D M I K G K Q G R F R Q N L L G K R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S S T T T T
T T T T T T S
S G G G T S S T T S S S T T T T S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence D Y S G R S V I T V G P Y L R L H Q C G L P K K M A L E L F K P F I Y G K L E L R G L A T T I K A A K K M V E R E E A V V W D I L D E V I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
T T
T T T S S S S S T T S S
S S T T T T T T T
S S S T T T T T T S S T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence E H P V L L N R A P T L H R L G I Q A F E P V L I E G K A I Q L H P L V C A A Y N A D F D G D Q M A V H V P L T L E A Q L E A R A L M M S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S G G G
S S
T T T T
T T S
S S T T T G G G T T T T
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence N N I L S P A N G E P I I V P S Q D V V L G L Y Y M T R D C V N A K G E G M V L T G P K E A E R L Y R S G L A S L H A R V K V R I T E Y E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S S S S
S
T T T T T S S
S S
S S
S
S T T S S T T T S S
S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence L V A K T S L K D T T V G R A I L W M I V P K G L P Y S I V N Q A L G K K A I S K M L N T C Y R I L G L K P T V I F A D Q I M Y T G F A Y A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T S
T T
G G G S S S
T T T S T T T T T T S
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence A R S G A S V G I D D M V I P E K K H E I I S E A E A E V A E I Q E Q F Q S G E R Y N K V I D I W A A A N D R V S K A M M D N L Q T E T V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T S
S T T T T T S S S S
S T T T S T T T T T S S S B

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence N R D G Q E E K Q V S F N S I Y M M A D S G A R G S A A Q I R Q L A G M R G L M A K P D G S I I E T P I T A N F R E G L N V L Q Y F I S T H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
B
T S S S S S S
T T T S T T T T S
B
B
S S
B
S S
B
T T T
G G G T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence G A R K G L A D T A L K T A N S G Y L T R R L V D V A Q D L V V T E D D C G T H E G I M M T P V I E G G D V K E P L R D R V L G R V T A E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S T T T S G G G T T T
S
S
S S S
S S S S B B S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence V L K P G T A D I L V P R N T L L H E Q W C D L L E E N S V D A V K V R S V V S C D T D F G V C A H C Y G R D L A R G H I I N K G E A I G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
B
T T T T T T T
S
G G G
T T S
S T T T
B
T T T S S B
S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence I A A Q S I G E P G T Q L T M R T A E S S I Q V K N K G S I K L S N V K S V V N S S G K L V I T S R N T E L K L I D E F G R T K E S Y K V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G S S
S
S
S S S
T T S
S S
S S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence Y G A V L A K G D G E Q V A G G E T V A N W D P H T M P V I T E V S G F V R F T D M I D G Q T I T R Q T D E L T G L S S L V V L D S A E R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S S
T T
S S
S S
S S
B T T T
T T S
S S S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence A G G K D L R P A L K I V D A Q G N D V L I P G T D M P A Q Y F L P G K A I V Q L E D G V Q I S S G D T L A R I P Q G G L P R V A D L F E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S S
T T S
B
B
T T S S
B
S S
S
T T
S S
T T T T S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence R R P K E P A I L A E I S G I V S F G K E T K G K R R L V I T P V D G S D P Y E E M I P K W R Q L N V F E G E R V E R G D V I S D G P E A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
B
S S S S
B
S S S S S
S S S
S S
S S S
S
S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence H D I L R L R G V H A V T R Y I V N E V Q D V Y R L Q G V K I N D K H I E V I V R Q M L R K A T I V F L E G E Q V E Y S R V K I A N R E L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S T T T T T
T T T T S S S
B
T T S
B T T S S S S S T T T

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence T Y S R D L L G I T K A S L A T E S F I S A A S F Q E T T R V L T E A A V A G K R D E L R G L K E N V I V G R L I P A G T G Y A Y H Q D R M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S
S S T T T S S S
T T T T T T T T
S T T S S T T T T
S S G G G

. . . . .

Sequence R R R A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	F	D	A	I	K	I	A	L	A	S	P	D	M	I	R	S	W	S	F	G	E	V	K	K	P	E	T	I	N	Y	R	T	F	K	P	E	R	D	G	L	F	C	A	R	I	F	G	P	V	K	D	Y	E	C	L	C	G	K	Y	K	R	L	K	H	R	G	V	I	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T															B		S	S	S			B		S	S	S	T	T		T	T	T	S			S	S	T	T			S	S		S	S		S	S	S		S	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	K	C	G	V	E	V	T	Q	T	K	V	R	R	E	R	M	G	H	I	E	L	A	S	P	T	A	H	I	W	F	L	K	S	L	P	S	R	I	G	L	L	L	D	M	P	L	R	D	I	E	R	V	L	Y	F	E	S	Y	V	V	I	E	G	G	M	T	N	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T			B				T	T	S	T	T	T														S	T	T	T	S	S	S	S		S	S	S			-				G	G	G	T	T	T	T	T	T	T	S	S								B	T	T	B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	Q	Q	I	L	T	E	E	Q	Y	L	D	A	L	E	E	F	G	D	E	F	D	A	K	M	G	A	E	A	I	Q	A	L	L	K	S	M	D	L	E	Q	E	T	K	R	I	K	L	N	K	P	E	W	M	I	L	T	V	L	P	V	L	P	P	D	L	R	P	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T															S	S			S					G	G	G	T	T	T	T	S	S	S										G	G	G				S	S		S										T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	S	D	L	N	D	L	Y	R	R	V	I	N	R	N	N	R	L	K	R	L	A	P	D	I	I	V	R	N	E	K	R	M	L	Q	E	A	V	D	A	L	L	D	N	R	P	L	K	S	L	A	D	M	I	K	G	K	Q	G	R	F	R	Q	N	L	L	G	K	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G	S	S									T	T	T	T								T	T	T									T	T	T	S								S	G	G	G	T	S	S	T	T	S	S	S	T	T	T	T	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	D	Y	S	G	R	S	V	I	T	V	G	P	Y	L	R	L	H	Q	C	G	L	P	K	K	M	A	L	E	L	F	K	P	F	I	Y	G	K	L	E	L	R	G	L	A	T	T	I	K	A	A	K	K	M	V	E	R	E	E	A	V	V	W	D	I	L	D	E	V	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S										T	T			T	T						T	T	T	S	S	S	S	S										T	T	S	S		S	S	T	T	T	T					T	T	T		S	S	S	T	T	T	T	T	T	S	S	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	E	H	P	V	L	L	N	R	A	P	T	L	H	R	L	G	I	Q	A	F	E	P	V	L	I	E	G	K	A	I	Q	L	H	P	L	V	C	A	A	Y	N	A	D	F	D	G	D	Q	M	A	V	H	V	P	L	T	L	E	A	Q	L	E	A	R	A	L	M	M	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T								S	S			S	G	G	G											S	S						T	T	T					T			T	T	S										S	S	T	T	T	G	G	G	T	T	T	T		T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	N	N	I	L	S	P	A	N	G	E	P	I	I	V	P	S	Q	D	V	V	L	G	L	Y	Y	M	T	R	D	C	V	N	A	K	G	E	G	M	V	L	T	G	P	K	E	A	E	R	L	Y	R	S	G	L	A	S	L	H	A	R	V	K	V	R	I	T	E	Y	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			S		S	S	S	S	S		S					T	T	T	T	T					S	S				S	S		S	S		S					S	T	T	S	S					T	T	T	S	S		S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	L	V	A	K	T	S	L	K	D	T	T	V	G	R	A	I	L	W	M	I	V	P	K	G	L	P	Y	S	I	V	N	Q	A	L	G	K	K	A	I	S	K	M	L	N	T	C	Y	R	I	L	G	L	K	P	T	V	I	F	A	D	Q	I	M	Y	T	G	F	A	Y	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	G	G	G	T	S		T	T			G	G	G	S	S	S				T	T	T	S	T	T	T	T	T	T	S						S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	A	R	S	G	A	S	V	G	I	D	D	M	V	I	P	E	K	K	H	E	I	I	S	E	A	E	A	E	V	A	E	I	Q	E	Q	F	Q	S	G	E	R	Y	N	K	V	I	D	I	W	A	A	A	N	D	R	V	S	K	A	M	M	D	N	L	Q	T	E	T	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T						T	T	T	S				S	T	T	T	T	T	S	S	S	S																S	T	T	T	S														T	T	T	T	T	S	S	S	B
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	N	R	D	G	Q	E	E	K	Q	V	S	F	N	S	I	Y	M	M	A	D	S	G	A	R	G	S	A	A	Q	I	R	Q	L	A	G	M	R	G	L	M	A	K	P	D	G	S	I	I	E	T	P	I	T	A	N	F	R	E	G	L	N	V	L	Q	Y	F	I	S	T	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S				B									T	S	S	S	S	S	S			T	T	T	S	T	T	T	T	S			B			B		S	S			B		S	S		B				T	T	T									G	G	G	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	G	A	R	K	G	L	A	D	T	A	L	K	T	A	N	S	G	Y	L	T	R	R	L	V	D	V	A	Q	D	L	V	V	T	E	D	D	C	G	T	H	E	G	I	M	M	T	P	V	I	E	G	G	D	V	K	E	P	L	R	D	R	V	L	G	R	V	T	A	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S	S	T	T	T					S	G	G	G	T	T	T										S						S																S	S	S									S	S	S	S	B	B	S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	V	L	K	P	G	T	A	D	I	L	V	P	R	N	T	L	L	H	E	Q	W	C	D	L	L	E	E	N	S	V	D	A	V	K	V	R	S	V	V	S	C	D	T	D	F	G	V	C	A	H	C	Y	G	R	D	L	A	R	G	H	I	I	N	K	G	E	A	I	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S						S	S		B			T	T	T	T	T					T	T		S							G	G	G				T	T	S			S	T	T	T		B		T	T	T	S	S	B			S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	I	A	A	Q	S	I	G	E	P	G	T	Q	L	T	M	R	T	A	E	S	S	I	Q	V	K	N	K	G	S	I	K	L	S	N	V	K	S	V	V	N	S	S	G	K	L	V	I	T	S	R	N	T	E	L	K	L	I	D	E	F	G	R	T	K	E	S	Y	K	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	G	G	G	S	S		S					S						S	S							S							T	T	S							S	S								S	S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	Y	G	A	V	L	A	K	G	D	G	E	Q	V	A	G	G	E	T	V	A	N	W	D	P	H	T	M	P	V	I	T	E	V	S	G	F	V	R	F	T	D	M	I	D	G	Q	T	I	T	R	Q	T	D	E	L	T	G	L	S	S	L	V	V	L	D	S	A	E	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S				S	S		S	S					T	T								S	S							S	S		S						S			B	T	T	T							T	T	S										S	S	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	A	G	G	K	D	L	R	P	A	L	K	I	V	D	A	Q	G	N	D	V	L	I	P	G	T	D	M	P	A	Q	Y	F	L	P	G	K	A	I	V	Q	L	E	D	G	V	Q	I	S	S	G	D	T	L	A	R	I	P	Q	G	G	L	P	R	V	A	D	L	F	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S	S										T	T	S		B		B		T	T	S	S		B							S	S					S		T	T					S	S											T					T	T	T	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	R	R	P	K	E	P	A	I	L	A	E	I	S	G	I	V	S	F	G	K	E	T	K	G	K	R	R	L	V	I	T	P	V	D	G	S	D	P	Y	E	E	M	I	P	K	W	R	Q	L	N	V	F	E	G	E	R	V	E	R	G	D	V	I	S	D	G	P	E	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S									S	S			B					S	S	S	S				B			S	S	S	S	S								S	S	S							S	S			S	S	S				S		S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	H	D	I	L	R	L	R	G	V	H	A	V	T	R	Y	I	V	N	E	V	Q	D	V	Y	R	L	Q	G	V	K	I	N	D	K	H	I	E	V	I	V	R	Q	M	L	R	K	A	T	I	V	F	L	E	G	E	Q	V	E	Y	S	R	V	K	I	A	N	R	E	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T		S	T	T	T															T	T					T	T	T	T	S	S						S		B							T	T	S			B	T	T	S	S	S	S	S	T	T	T
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	T	Y	S	R	D	L	L	G	I	T	K	A	S	L	A	T	E	S	F	I	S	A	A	S	F	Q	E	T	T	R	V	L	T	E	A	A	V	A	G	K	R	D	E	L	R	G	L	K	E	N	V	I	V	G	R	L	I	P	A	G	T	G	Y	A	Y	H	Q	D	R	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	T	T	S	S		S	S	T	T	T	S	S	S		T	T	T	T	T					T	T	T							S	T	T	S	S	T	T	T	T				S	S	G	G	G
	.	.	.	.	.
Sequence	R	R	R	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T