Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6kgvA_

Fold library idPDB HeaderMoleculeTitle
c6kgvA_2.30PDB header: transferaseChain: A: PDB Molecule: penicillin-binding protein pbpb;


Added to library: Sat Mar 14 09:19:54 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DVQPAARGSIVDRNNDRLAFTIEARAAERQDLRQYPGGSLAANVVGGIDWDGHGLLGLEDSLDAVLAGTD
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)







TT





TTTTTT

TTSSTT
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence GSVRHKAVHGSTVVLTLDNDIQFYVQQQVQQAKNLSGAHNVSAVVLDAKTGEVLAMANDNTFDPSQDIGR
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

B

B


S



S
TTT
BSSB

TTS
GGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence QGDKQLGNPAVSSPFEPGSVNKIVAASAVIEHGLSSPDEVLQVPGSIQMGGVTVHDAWEHGVMPYTTTGV
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)
TTSB
S


B

GGGGTTS

TT
B

B
STT
SS

SSB
BB
 .........220.........230.........240.........250.........260.........270.........280
Sequence FGKSSNVGTLMLSQRVGPERYYDMLRKFGLGQRTGVGLPGESAGLVPPIDQWSGSTFANLPIGQGLSMTL
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) TT
TTTTS



S
TT



B


GGG

TTGGGTGGGT
S
BB
 .........290.........300.........310.........320.........330.........340.........350
Sequence LQMTGMYQAIANDGVRVPPRIIKATVAPDGSRTEEPRPDDIRVVSAQTAQTVRQMLRAVVQRDPMGYQQG
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) TTT


BS
TTS







S
GGGG


TTSTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence TGPTAGVPGYQMAGKTGTAQQINPGCGCYFDDVYWITFAGIATADNPRYVIGIMLDNPARNSDGAPGHSA
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) S
GGG

TTS

TTTT
SSS

S
SB
TTSSBS

S
 .........430.........440........
Sequence APLFHNIAGWLMQRENVPLGPPLVLQAT
Predicted secondary structure












SS confidence



























Known secondary structure (DSSP) TT







SB


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D