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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6kfnA_

Fold library idPDB HeaderMoleculeTitle
c6kfnA_0.89PDB header: lyaseChain: A: PDB Molecule: alginate lyase;


Added to library: Sat Nov 2 08:23:52 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ATRTISCATASCLQSALKNAKPGDDIVLAEGVTFKGSFKAEASGTASQPITIRSAGSVNPAVLSGYSTGG
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Known secondary structure (DSSP)


ST

TT
TT
S

S


SSS
S
SSS


S
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GYSLYVTGDYWNITGLKMTGALKGIMLDHANHVQMDGLEIYDIGDEGVHFRDGSSDNIIRNSHIYNTGLI
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Known secondary structure (DSSP) S
SSSS
SS

S
S
SS
STT

S
S
SB
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence EAGFGEGIYVGSDKGKWATYNKSADRNVISGVRIGPGVAAEHIDIKEGTVGTIVENSVFNGTGITGANYA
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Known secondary structure (DSSP)
GGG

SS

GGGTTTS
S


S
S

SSB
S
S
TT
B

S

TT


GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence DSFIDVKGNDAVIRNNIGYRNGNSNIVDAFQVHVQVAGWGQNATFTGNTVYLDQAAPYVVNAVGDATASA
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Known secondary structure (DSSP)

SBS
S

TT
TT



SSTT
S
SS

SSS
S
TT
 .........290........
Sequence AGNQRYPAGNLYQGHVNA
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SS confidence

















Known secondary structure (DSSP) S
SS


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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