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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6k8nD_

Fold library idPDB HeaderMoleculeTitle
c6k8nD_2.10PDB header: isomerase, dna binding proteinChain: D: PDB Molecule: topoisomerase iii;


Added to library: Sat Jun 27 19:16:29 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNLCNVNNYYLIIAEKSKAAKKIAEALSEKPILCRKYNVSYWIIKDHNSSKYVIVPAAGHLFGLKGESGF
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Known secondary structure (DSSP)

TT


SSS
SS
TT
SSSSS

S



SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PVYDADWKPLWEIDKNSYYTKRYYQLISSLSKYALGFINACDYDIEGSVIGYLIIKNLGDIKKAKRMKFS
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Known secondary structure (DSSP)





GGGGGGTS
SSS
GGG


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence ALTKSDILSAFRNISALDYDMINAGIARHKIDWLWGINVSRALMISLQDFAKKRVILSAGRVQSPTLVQV
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Known secondary structure (DSSP) S

T
B


TT
SS






TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VNSEIERNLFIPLPKFTVSIIVKIKDYSLNIKVNKEFEKITEAKEFLNKLINKTVKVVEVENRVRLLERP
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Known secondary structure (DSSP) T



TT
S

BSSTT



 .........290.........300.........310.........320.........330.........340.........350
Sequence SPFNLTDLQIEAGRIYGISPYNVERIAEDLYLDGLISFPRTNSQKIPSTISIYNIIKGLENSSYRKLVDL
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Known secondary structure (DSSP)

B



TTSB










TTS
TTSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VRKITGGKYVVKQGIKDDPAHPAIHPTGEAPKNLPNSKFKIYDLIARRFLGSVSADAKLSNTIYTLKVSD
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Known secondary structure (DSSP) TT






S


TTS

B
B
S



S

TS

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence FPLEFTVSYTKILERNWLDIYHFHNVKEDKPIFLSKGDEGKIVDGKVNISLSKPTSRYTKVSLLKWMESS
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Known secondary structure (DSSP) SS

GGGGTS
SS










TT







BT
 .........500.........510.........520.........530.........540.........550.........560
Sequence NLGTEATRGRIIEILVKRKYLTNNGRYIIPTKLGFYIAEILNKFFPDIVDVRMTADMESKLEMIKTGKVL
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Known secondary structure (DSSP) T
S
TTTTTSTT

GGGG
TTSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence ESKVIKENIEKLNKFIEEYKVNKDKVGESLAKALGLIKIVKCKYCDLEQYKDGLCKYHYEAKVRLLDAVE
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Known secondary structure (DSSP) TTSS


B
SSSSSB

BTTB
 .........640.........650.........660......
Sequence IWKERTKYDHKKILKRISSSKSTGKYVKDIVTYMLS
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Known secondary structure (DSSP)



TTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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