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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6jx7B_

Fold library idPDB HeaderMoleculeTitle
c6jx7B_3.31PDB header: viral proteinChain: B: PDB Molecule: feline infectious peritonitis virus spike protein;


Added to library: Sat Jan 18 08:28:08 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YCDHEDNCGWYNFVYNNKVGPNAKYSYINTQNLNIPNVHGVYFDVREHNSDGVWDQIDRVGLLIAIHGTS
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Known secondary structure (DSSP)

TTTTTT

SS









SS





S

SS


SS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HYSLLMVLQDGVEASQPHVAVKICHWNPGNISTYHQFDVNLGDGGQCVFNQRFSLDTVLTANDFYGFQWT
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Known secondary structure (DSSP)
SSS

SSS


SS

S


S

SS
S


S




SSS



 .........150.........160.........170.........180.........190.........200.........210
Sequence DTYVDIYLGGTITKVWVVNDWSVVEASISSHWNALNYGYYIQFVNRTTYYAYNSTGGSNYTHLQLTECHT
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Known secondary structure (DSSP) SS


TT


S









SS







S


B



SS

SSSS



B
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DYCAGYAKNVFVPIDGKIPEGFSFSNWFLLTDKSTLVQGRVLSSQPVFVQCLRPVPTWSNNTAVVHFKND
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Known secondary structure (DSSP) SS
TT

TT



SSS


SS


SS



BSS





BSSS


SBS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VFCPNVTADVLRFNLNFSDTDVYTDSTTDDQLHFTFEDNTTASITCYSSNSYLCFANFSHSSVSRQFLGI
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Known secondary structure (DSSP) SSSSS
B
S

B






B


SS


STTS








SSS



 .........360.........370.........380.........390.........400.........410.........420
Sequence LPPTVREFAFGRDGSIFVNGYKYFSLQPIKSVNFSISSVENYGFWTIAYTNYTDVMVDVNGTVITRLFYC
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Known secondary structure (DSSP)
S


BSSS
TT







S

SSB
BSSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence DSPLNRIKCQQLKHELPDGFYSASMLVKKDLPKTFVTMPQFYNWMNVTLHVVLNDIEKKADIILAGAPEL
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Known secondary structure (DSSP)
ST
SS

S




S









B



SSSSS
GGG

 .........500.........510.........520.........530.........540.........550.........560
Sequence ASLADIHFEIAQANGSVVNVTSVCVQARQLALFYKYTSLQGLYTYSNLVQLQNYDCPFSPQQFNNYLQFE
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Known secondary structure (DSSP) T


SSSSS

B

SS
SSS

STTS

SSSSS
GGGTTSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence TLCFDVSPAVAGCKWSLVHDVKWRTQFATITVSYKDGAMITTMPKAQLGFQDISNIVKDECTDYNIYGFQ
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Known secondary structure (DSSP)
SSS
S
SS
SSS

B



SS


S
SS




BSSTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence GTGIIRSTTSRLVAGLYYTSASGDLLGFKISTTGEIFTVVPCDLTAQAAVINDEIVGAITATNQTDLFEF
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Known secondary structure (DSSP)





S
S
TTS

SSSS

SS

SSSSSSS


SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence VNHSTVNTYTMPQFYYITKWNNGTSSNCTSVITYSSFAICNTGEIKYVNVTHVEIVDDSVGVIKPVSTGN
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Known secondary structure (DSSP) S






SS

S

SSS






B

TT
TTS






SSSS
SSSS




SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence ITIPKNFTVAVQAEYVQIQVKPVAVDCAKYVCNGNRHCLNLLTQYTSACQTIENSLNLGARLESLMLNDM
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Known secondary structure (DSSP)










SSS
TTGGGGTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence ITVSDRSLEFATVDKFNTTALGGEKLGGLYFDGLSSLLPPRVGMRSAVEDLLFNKVVTSGLGTVDDDYKK
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Known secondary structure (DSSP)



TT
STTTTTS

SSS

SS
TTS
SSSSS

TTTTTTTT






STT
 .........920.........930.........940.........950.........960.........970.........980
Sequence CSAGTDVADLVCAQYYNGIMVLPGVVDYNKMAMYTASLIGGMALGSITSAVAVPFSMQVQARLNYVALQT
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Known secondary structure (DSSP) TTT
SSS

TT


SS



TT





TTS


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DVLQENQKILANAFNNAIGNITLALGKVSNAITTVSDGFNSMASALTKIQSVVNQQGEALSHLISQLQKN
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Known secondary structure (DSSP) S

S

S
S



STTTGGGS

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FQAISSSIAEIYNRLEKVEADAQVDRLITGRLAALNAYVAQTLTQYAEVKASRQLAMEKVNECVKSQSDR
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Known secondary structure (DSSP) TTSS
S
TTTS
TTTT



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence YGFCGNGTHLFSLVNSAPDGLLFFHTVLLPTEWEEVTAWSGICVNDTYAYLLKDFDHSIFSYNGTYMVTP
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Known secondary structure (DSSP) TTSSSSSSTT




BS
TTTSSSSSSS
 .........1200.........1210.........1220.........1230.........1240.....
Sequence RNMFQPRKPQMSDFVQITSCEVTFLNTTHTTFQEIVIDYIDINKTIADMLEQYHS
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Known secondary structure (DSSP) SSS


B


GGGS


TTS
STT


T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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