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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6jimA_

Fold library idPDB HeaderMoleculeTitle
c6jimA_2.00PDB header: viral protein/rnaChain: A: PDB Molecule: helicase;


Added to library: Sat Apr 13 08:23:32 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHNGYDGRVLVPSGYAISP
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Known secondary structure (DSSP)


TT
B

TTS
TT

GGGGGGTTT






SS
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence EDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESYELVRAERTEHEYVYDVDQRRCCKKEEAAG
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Known secondary structure (DSSP)


TTSGGGG
TTT


STTTTGGG

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LVLVGDLTNPPYHEFAYEGLKIRPACPYKIAVIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITT
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Known secondary structure (DSSP) SGGGSS
GGG

SS




STTSS

TTSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DVMRQRGLEISARTVDSLLLNGCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNM
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Known secondary structure (DSSP)








S

STGGGS


SS
TTS




T
 .........290.........300.........310.........320.........330.........340.........350
Sequence MQMKVNYNHNICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTC
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Known secondary structure (DSSP) T










S
SSS
STT









SS





TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FRGWVKQLQIDYRGYEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGKLVWKTLSGD
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Known secondary structure (DSSP)
TTTSTGGGTT


S

S

GGGSTT
TT

TT
 .........430.........440.........450....
Sequence PWIKTLQNPPKGNFKATIKEWEVEHASIMAGICS
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Known secondary structure (DSSP) TS


S

B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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