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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6j9eD_

Fold library idPDB HeaderMoleculeTitle
c6j9eD_3.41PDB header: transcriptionChain: D: PDB Molecule: dna-directed rna polymerase subunit beta';


Added to library: Sat Jul 20 08:35:38 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAAIFGPIKDYEC
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Known secondary structure (DSSP)


SSGGG








S






S
B





B
TTS

B
TTSSS
TTTT

SSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence LCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLY
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Known secondary structure (DSSP) SS
S


SS

S
B
SSS

B


GGGGTT



TTTTSSSS
TT

T
 .........150.........160.........170.........180.........190.........200.........210
Sequence FEAYVVTRRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLT
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Known secondary structure (DSSP) TSS




TS
S

SS

SSTT


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence KRIKLIEAFLESGNRPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAP
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Known secondary structure (DSSP) T


GGGS


TTTS


B
TTS
B


STT

 .........290.........300.........310.........320.........330.........340.........350
Sequence DIIVRNEKRMLQESVDALLDNGRRGRAIKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLK
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Known secondary structure (DSSP) STTSSS








TTTTTSSSSSTT




S


SS
SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHPVLLNRAPTLHRL
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Known secondary structure (DSSP) SSTTS
SST
GGG

SS

SGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence GIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARALMMSTNNILSPANGEPIIVP
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Known secondary structure (DSSP) GSSSS
TTTT

SSS



SSBTTT

B
SSSSSBS


 .........500.........510.........520.........530.........540.........550.........560
Sequence SQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNRVVELHAKVKVRITQVDVDRTSGTSIVDTTVGR
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Known secondary structure (DSSP)



SS
TT
S
B
SSTTSS
SS



 .........570.........580.........590.........600.........610.........620.........630
Sequence ALLSEILPEGLPFQLANTEMTKKNISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLI
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Known secondary structure (DSSP) TTTS
SSS
TTSSSS


T
STTT



SSSS

 .........640.........650.........660.........670.........680.........690.........700
Sequence PDEKKGILTEAEAEVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQ
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Known secondary structure (DSSP)
TSS
T

TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence KSMNSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGARKGLADT
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Known secondary structure (DSSP)



SSS

TTTSS

B

B
TTS
B
SS
B


SSS


 .........780.........790.........800.........810.........820.........830.........840
Sequence ALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLKERVLGRVVAEDVVTRNTLLD
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Known secondary structure (DSSP) S
S
BB

S









SSS
STTSBBSS



SS
B

 .........850.........860.........870.........880.........890.........900.........910
Sequence EAWVAKLEDASVQSVKVRSTISCESSFGVCARCYGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTDNIT
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Known secondary structure (DSSP) T




SSS


SSSB

B
SSSSSB

TT
BTTTSGGGS



 .........920.........930.........940.........950.........960.........970.........980
Sequence VKTTGSVKFNNLKAVSRSGELSVLDGHGRERERYKLPYGATITAAVKAGQSVANWDPGLPRVADLFEARK
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Known secondary structure (DSSP)

S



BS




SS
SSS




TT

B




SS





T

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDI
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Known secondary structure (DSSP)
SSB

B
SS






SS
SSS

TTS




SS

TT
BSS
SB

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSKFLNGEQVERQRVIEENA
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Known secondary structure (DSSP) T
ST



T
SS
SSS
SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RLVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAG
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Known secondary structure (DSSP) SS
SS







TTS
S
TSSS
T



SST


SSS
 .........1200
Sequence TGLAYHAGRR
Predicted secondary structure






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Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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