Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6j0qA_

Fold library idPDB HeaderMoleculeTitle
c6j0qA_2.00PDB header: viral proteinChain: A: PDB Molecule: vp1 capsid protein;


Added to library: Sat Nov 23 08:22:06 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KPFSLPSLTLDELSNSRFPAPIVQLYTNPHDNLVVQPQNGRCTIDGLLQGTTQLVSCNVCSFRGTLGDGQ
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)








GGG
B
SSSS
B



TT




SSS
B
TTS
B
TT

S
GGGTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence PAMAFNIQREIMLENLDGSPYDPTDDIPAVLGSPDFQGVVFGILSQRNTDGQTRAHEAKVDTRLARFAPK
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP)






TTSS


TTSSSSSSTT


SBS
TTS
TTSTT
BTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LGFVVATVENTDFHANQPCRFTPVGLGGDNNRDFNQWGLPAYGGALTNNTNLAPPVMPVYPGEQLLFFRS
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP) TTS
S


TT
SSSGGG
BTTS


TT
TT



S







STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence QLPSSGGVVGGWLDCLLPQEWVQHFFQESATSQSDVALVRYINPTTGRVLFEAKLHKQGFLTVAASGSYP
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP)

BSSSS


SS




SSS
TTT

TTTS

SS
 .........290.........300.......
Sequence LVVPADGYFRFESWVNQFYTLAPMGNG
Predicted secondary structure










SS confidence


























Known secondary structure (DSSP)



TT

TT





TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D