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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6j09A_

Fold library idPDB HeaderMoleculeTitle
c6j09A_3.00PDB header: transport proteinChain: A: PDB Molecule: outer membrane protein assembly factor bama;


Added to library: Sat Nov 2 08:20:39 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence APFVAKDIRVDGVQGDLEQQIRASLPVRAGQRVTDNDVANIVRSLFVSGRFDDVKAHQEGDVLVVSVVAK
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Known secondary structure (DSSP)


S


B
S

T
SS
TTS
TT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SIISDVKIKGNSIIPTEALKQNLDANGFKVGDVLIREKLNEFAKSVKEHYASVGRYNATVEPIVNTLPNN
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Known secondary structure (DSSP)
S

SS
TT
SSSSB

TT
TT
TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RAEILIQINEDDKAKLASLTFKGNESVSSSTLQEQMELQPDSWWKLWGNKFEGAQFEKDLQSIRDYYLNN
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Known secondary structure (DSSP) SSS


S
SSS
TTS
S

TTS




TTS
TTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GYAKAQITKTDVQLNDEKTKVNVTIDVNEGLQYDLRSARIIGNLGGMSAELEPLLSALHLNDTFRRSDIA
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Known secondary structure (DSSP) S
TT


SSSS








S
GGGTTS

SS

 .........290.........300.........310.........320.........
Sequence DVENAIKAKLGERGYGSATVNSVPDFDDANKTLAITLVVDAGRRLTVRQ
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Known secondary structure (DSSP) TT
TT


TTTT









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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