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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6iv6A_

Fold library idPDB HeaderMoleculeTitle
c6iv6A_3.60PDB header: immune system/rnaChain: A: PDB Molecule: nuclease;


Added to library: Sat Apr 13 08:21:21 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MLFQDFTHLYPLSKTVRFELKPIGTLEHIHAKNFLNQDETMADMYQKVKAILDDYHRDFIADMMGEVKLT
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Known secondary structure (DSSP)
TTSS
BS
S



TTT




 .........80.........90.........100.........110.........120.........130.........140
Sequence KLAEFYDVYLKFRKNPKDDGLQKQLKDLQAVLRKEIVKPIGNGGKYKAGYDRLFGAKLFKDGKELGDLAK
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Known secondary structure (DSSP)
TT


TTT
SSSTTTTTT
SS
TT
SSSSTTTTSSSTT

TTTST
 .........150.........160.........170.........180.........190.........200.........210
Sequence FVIAQEGESSPLAHLAHFEKFSTYFTGFHDNRKNMYSDEDKHTAIAYRLIHENLPRFIDNLQILATIKQK
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Known secondary structure (DSSP)
TTT




TTSSTTT
GGGGTTTTTT
SS

TTSTTT
SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence HSALYDQIINELTASGLDVSLASHLDGYHKLLTQEGITAYNTLLGGIQGINELINSHHNQHSERIAKLRP
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Known secondary structure (DSSP) STTSTTTSSS
GGGSS
SSTTGGGSS



TT










 .........290.........300.........310.........320.........330.........340.........350
Sequence LHKQISKFADDSEVCQAVNEFYRHYADVFAKVQSLFDGFDDYQKDGIYVEYKNLNELSKQAFGDFALLGR
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Known secondary structure (DSSP)








STSSTTT

SSTTTTS
SSS



GGGSSS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VLDGYYVDVVNPEFNASLEQAIEHYTARHDDESVQAGKLGQYFKHGLAGVDNPIQKIHNNHSTIKGFLER
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Known secondary structure (DSSP) TTGGG








STTS


S






TTTSS



SSSTTTSTSTTSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence ERPAGERALPKIKSDKSPEIRQLKELLDNALNVAHFAKLLTTKTTLHNQDGNFYGEFGALYDELAKIATL
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Known secondary structure (DSSP) SSS





S




SSSTTTTTTT





SSS
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence YNKVRDYLSQKPFSTEKYKLNFGNPTLLNGWDLNKEKDNFGVILQKDGCYYLALLDKAHKKVFDNAPNTG
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Known secondary structure (DSSP) S

SS



TT
TTTTSS
SSTT

SS


SS


TTTS




 .........570.........580.........590.........600.........610.........620.........630
Sequence KSVYQKMIYKLLPGPNKMLPVFFAKSNLDYYNPSAELLDKYAQGTHKKGDNFNLKDCHALIDFFKAGINK
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Known secondary structure (DSSP) SS











SSSS
SS

TT
GGGSSS


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence HPEWQHFGFKFSPTSSYQDLSDFYREVEPQGYQVKFVDINADYINELVEQGQLYLFQIYNKDFSPKAHGK
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Known secondary structure (DSSP) SSSSTTS





TTT


T


TTTSS
GGGSSS

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence PNLHTLYFKALFSEDNLVNPIYKLNGEAEIFYRKASLDMNETTIHRAGEVLENKNPDNPKRQFVYDIIKD
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Known secondary structure (DSSP)

TTTS
GGGSSS
S
S







TTTS

B
TT




SSSS





SS
B
TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence KRYTQDKFMLHVPITMNFGVQGMTIKEFNKKVNQSIQQYDEVNVIGIDRGERHLLYLTVINSKGEILEQR
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Known secondary structure (DSSP) S

STT



SGGGTTS
S

SSSS
SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence SLNDITTASANGTQMTTPYHKILDKREIERLNARVGWGEIETIKELKSGYLSHVVHQISQLMLKYNAIVV
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Known secondary structure (DSSP) SSSSS
TT
SSS
STT
 .........920.........930.........940.........950.........960.........970.........980
Sequence LEDLNFGFKRGCFKVEKQIYQNFENALIKKLNHLVLKDKADDEIGSYKNALQLTNNFTDLKSIGKQTGFL
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Known secondary structure (DSSP)
TTTS





SS
SB

SSS
TTSTTSSSS
B

S

TTS
S


STT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FYVPAWNTSKIDPETGFVDLLKPRYENIAQSQAFFGKFDKICYNADRGYFEFHIDYAKFNDKAKNSRQIW
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Known secondary structure (DSSP)

TT
SS
BTTTTB


S



S
TT
S

TTT
STTTSSS


SS

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KICSHGDKRYVYDKTANQNKGATIGVNVNDELKSLFTRYHINDKQPNLVMDICQNNDKEFHKSLMYLLKT
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Known secondary structure (DSSP)

S
B






TTT
SSS


B
TTTTTTTTT



SS

TT


SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LLALRYSNASSDEDFILSPVANDEGVFFNSALADDTQPQNADANGAYHIALKGLWLLNELKNSDDLNKVK
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Known secondary structure (DSSP)


SSTT
B
SS

SSS


BSSS

SSS

ST
S

SS

 .........1200.....
Sequence LAIDNQTWLNFAQNR
Predicted secondary structure


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Known secondary structure (DSSP)






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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