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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6irfD_

Fold library idPDB HeaderMoleculeTitle
c6irfD_5.10PDB header: membrane proteinChain: D: PDB Molecule: glutamate receptor ionotropic, nmda 2a;


Added to library: Sat Jan 19 08:42:10 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LNIAVMLGHSHDVTERELRTLWGPEQAAGLPLDVNVVALLMNRTDPKSLITHVCDLMSGARIHGLVFGDD
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Known secondary structure (DSSP)
S
S
TTTTSS

SS





TT



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence TDQEAVAQMLDFISSHTFVPILGIHGGASMIMADKDPTSTFFQFGASIQQQATVMLKIMQDYDWHVFSLV
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Known secondary structure (DSSP)


TTTT


GGGT






SS

SS

TT

B

 .........150.........160.........170.........180.........190.........200.........210
Sequence TTIFPGYREFISFVKTTVDNSFVGWDMQNVITLDTSFEDAKTQVQLKKIHSSVILLYCSKDEAVLILSEA
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Known secondary structure (DSSP)
STTT
SS

B



STT

STT

SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence RSLGLTGYDFFWIVPSLVSGNTELIPKEFPSGLISVSYDDWDYSLEARVRDGIGILTTAASSMLEKFSYI
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Known secondary structure (DSSP) TTT
TTS

TTTS

TT


TT

TT

TTSS

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PEAKASCYGQMERPEVPMHTLHPFMVNVTWDGKDLSFTEEGYQVHPRLVVIVLNKDREWEKVGKWENHTL
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Known secondary structure (DSSP)



S
SS


S



TT

STTTSS


BTTB


B
TTS
BSS




TT





BTTB
 .........360.........370.........380.........390.........400.........410.........420
Sequence SLRHAVWPRYKSFSDEPDDNHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKK
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SS









TTT





SSSS

TT





SS



 .........430.........440.........450.........460.........470.........480.........490
Sequence CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDF
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Known secondary structure (DSSP)
ST



S
SS


BTTB

TTSSSB

TT



S

 .........500.........510.........520.........530.........540.........550.........560
Sequence SVPFVETGISVMVSASVWVMMFVMLLIVSAIAVFVFEYFSPSFTIGKAIWLLWGLVFTTSKIMVSVWAFF
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Known secondary structure (DSSP)



S




TS



TTT

 .........570.........580.........590.........600.........610.........620.........630
Sequence AVIFLASYTANLAAFMIQRFVDQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTKF
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Known secondary structure (DSSP) TT








TTSSGGGSSS






SS

TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence NQKGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATQKGSPWKRQIDLALLQFVGD
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Known secondary structure (DSSP)

SSSSSS
TSSS



BSTTT

B


TT
T
 .........710.........720.........730.........740.........750..
Sequence GEMEELETLWLTGICHNEKNEVMSIDNMAGVFYMLAAAMALSLITFIWEHLF
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Known secondary structure (DSSP) TT
SSGGG










STTT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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