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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6ir5B_

Fold library idPDB HeaderMoleculeTitle
c6ir5B_2.60PDB header: viral proteinChain: B: PDB Molecule: vp1;


Added to library: Sat Nov 16 08:25:59 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTTQLLPSQICAFRGTLTRS
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Known secondary structure (DSSP)









GGG
B
SSSSSB



TTS
B

SSS
B
TTS
B
TT

S
GGGTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence TLFNYYWHIQLDNLNGTPYDPAEDIPAPLGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLG
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Known secondary structure (DSSP)



B
TTSSB

TTSSSSSSTT


SBS
TTS
TTSTT
BTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SLEITTESDDFDPNQPTKFTPVGVGVDNEAEFQQWSLPNYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQL
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Known secondary structure (DSSP) S




SS

SSGGG
BTTS


TTTTSS


S



B


STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence PSSGGRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIAKNGDSPIT
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Known secondary structure (DSSP)
BSSTT


SS





SS
TTT

TTT

SS
 .........290.........300..
Sequence VPPNGYFRFESWVNPFYTLAPM
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Known secondary structure (DSSP)

TT

TT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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