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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6iqwA_

Fold library idPDB HeaderMoleculeTitle
c6iqwA_3.35PDB header: rna binding protein/rnaChain: A: PDB Molecule: csm1;


Added to library: Sat Jan 19 08:25:56 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MEIDELTALGGLLHDIGKPVQRAGLYSGDHSTQGARFLRDLAENTGRAEYELLSLFSEFHHKGHMKNDEL
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Known secondary structure (DSSP)

TTSTTTTTTSS
S
TTTTTTSS
TTS
SSS
TTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence MIRRIKELSPERFGLTMEDVLNALWIVYEADNLASGPQASRPLYSVFNPGKAYPWAELDFEKELPVPGDV
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Known secondary structure (DSSP) TT
GGGTT

STTT



TT


B
SSSSS
B






TTS




BS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FSIRSQDYRELVKRLWEELSKAKLRSDRLLPVLEKYLTFVSSVTSEGNIISLYDHMRMTSAIALAMLRAG
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Known secondary structure (DSSP)



SS
SSSSSSBSS
STT


BTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence CTAEDVRSGRCRKEKRFLLIEGDFSGIQDFIYRVSGKGTLKYLRARSAYLELIGWDVVLEILSRLGLTRA
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Known secondary structure (DSSP)

TTT
TTTS


TSS


TT

T

GG
 .........290.........300.........310.........320.........330.........340.........350
Sequence NVVFNAGGHFMIIAQNTPDAVKELEEIRAKAVEWLYREFESDLYLAIEWEPVSGREFGREGGKNLFAEAR
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Known secondary structure (DSSP) GTT


TTSTTT



GGGGS

SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KRLKHKLTVRKLKRFGEIKGLFEHGHTERLAECPVCGRELPEGKLEPSASDPETKVCPTCNRLVSLGGNL
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Known secondary structure (DSSP) STT


TTTT




SS



SS
S




TT



SSSTTS


T
 .........430.........440.........450.........460.........470.........480.........490
Sequence PKLLGFGRTAKNDAGVLVEGPFSGFVPYLQGGRPVGEQILVKNTLNPGEIPESAQFVPYFVADYFKKDPK
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Known secondary structure (DSSP) TT


TTSTT

B

SS

SS



SSS
S


SS
SSS






B
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence GGVATFEELSMASTGTRRLGVMKGDVDRLGEFFSSMDSPSKLATASRFMDYFFKGYIGAIIEGKFGYIIG
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Known secondary structure (DSSP) SSB

GGG
SSS

TTTTS

STTT


 .........570.........580.........590.........600.........610.........620.........630
Sequence DVPSLRDWPEEPDIVVVYAGGDDFFIVGAWDQIFELAFRVRRAFNAYTGGKLTLSVGLGYFDERTPIYRM
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Known secondary structure (DSSP) S


SS


SS
STTTTTS


TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence ADVVSERLDTAKDEGRNRVFVVGRSRPLDGKHKLSYEWNHYEELWRTYAPRIYAGNGRLKGKLESKKGLL
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Known secondary structure (DSSP) TTSS
S




SSSSS
SSTB
SSS
B
TTTTT
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence WKLLEIRELYVRDPNDVRWAYLTAYLLGRHGLSDLFPELVGIDTKAVERKEPQPVYWVDGVLKIVLMAVR
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Known secondary structure (DSSP)
SS

TS

SS
S

TT


TTTSSTTS
 .
Sequence R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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