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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6idvB_

Fold library idPDB HeaderMoleculeTitle
c6idvB_2.40PDB header: ligaseChain: B: PDB Molecule: peptide asparaginyl ligases;


Added to library: Sat May 18 08:24:18 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GTRWAVLIAGSKGYHNYRHQADVCHMYQILRKGGVKDENIIVFMYDDIAYNESNPFPGIIINKPGGENVY
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Known secondary structure (DSSP)





SGGGTT

GGG



STT
TT
SSTT


SSTT


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KGVPKDYTGEDINNVNFLAAILGNKSAIIGGSGKVLDTSPNDHIFIYYAHGAPGKIGMPSKPYLYADDLV
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Known secondary structure (DSSP) TT


SB
GGG
ST
GGG

SS







TT

-
BTT

SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence DTLKQKAATGTYKSMVFYVEACNAGSMFEGLLPEGTNIYAMAASNSTEGSWITYCPGTPDFPPEFDVCLG
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Known secondary structure (DSSP) TT

S
STTGGGGTTTTS
TTS
SS
SS


S
SSSSS

TT

S

 .........220.........230.........240.........250.........260.........270.........280
Sequence DLWSITFLEDCDAHNLRTETVHQQFELVKKKIAYASTVSQYGDIPISKDSLSVYMGTDPANDNRTFVDPL
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Known secondary structure (DSSP) S
TTS
BTTT



GGGGGSBT


GGGTT






 .........290.........300.........310.........320.........330.........340.........350
Sequence KVIHQHDADLYHIWCKYNMAPEGSSKKIEAQKQLLELMSHRAHVDNSITLIGKLLFGVNKASKVLNTVRP
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Known secondary structure (DSSP)

GGGS
TT

TTTT



 .........360.........370.........380.........390.........400.........410.........420
Sequence VGQPLVDDWQCLKAMIRTFETHCGSLSEYGMKHTLSFANMCNAGIQKEQLAEAAAQACVTFPSNPYSSLA
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Known secondary structure (DSSP) TT

S
S



TTGGGGGTT


SS


SGGG

T
 .....
Sequence EGFSA
Predicted secondary structure



SS confidence




Known secondary structure (DSSP) T




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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