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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6i60B_

Fold library idPDB HeaderMoleculeTitle
c6i60B_2.74PDB header: hydrolaseChain: B: PDB Molecule: alpha-rhamnosidase;


Added to library: Sat Feb 9 09:15:17 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KSSNIYSPFDLKCEFTTNPLGVDKKNPIFSWKLRHLEKNEKQTAYQVIVSSSLETINDNIGDVWDTGKVL
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Known secondary structure (DSSP)

S

S

SSSSS


SS



SSSS



SSTT


SS

SB
 .........80.........90.........100.........110.........120.........130.........140
Sequence SSEQVIKYEGKELEPCKVYFWKVRWWDSKDQESPFSVVNTFETGLMNEENWKAKWITKKEHKYEVYSPDG
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Known secondary structure (DSSP)


S

SS


TT

TT

B








SGGG





SS



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence APFGLNYTIAYAPMFRKSFSISKKIKRARVYIAGLGLYELYINGERIGDRVLDPGQTDYKKRVLYTVYDV
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Known secondary structure (DSSP)
TTS




S
STT

SSSSBS



TTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence SKNIRDGKNAIGVILGNGRYVKEYGYDFPKLIIQVLVEYEDDSIEWIVSDESWKTTYGPITLNSLYHGEI
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Known secondary structure (DSSP) TTT

S
TT

GGGT

S
TTS




TT

STTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence YDGRKEIKGWNLPDFDDSTWENAILAEPPGGKLYSEIYPPIRITKTIKPIKMWSPEPGTYVYDFGQNYTG
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Known secondary structure (DSSP) GGG

TTTTSSS

TTSS




SS








TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence WIKIKVRTNESGKEIRIRHAELTYEDGTLNYSTNRTALATDVYITKGEGYEEYEPRFTYHGFRYVEILGY
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Known secondary structure (DSSP)

S
SS
S
SSS

GGGTT






SS

SS

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence PGVPTLEDIEGKVVHTAVESNGEFICSNELINKIHHNIIWGQLSNLMSIPTDCPQRDERMGWMGDAQLSA
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Known secondary structure (DSSP) SS


TTS


B
S
TBSSSB
S
SSSS



BT
 .........500.........510.........520.........530.........540.........550.........560
Sequence EEAIFNFDMIGFYRKYLNDIRDAQKENGSLSDVIPPYWSIYPGDPAWSTAYITIAWYLYQYYGDKYVLEE
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Known secondary structure (DSSP) B



SS



SBSS
SS


S

T

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence HYEGFKKYVEFLKKLAPDYIVSFYKYGDWCQPGTVRPKDNSGELTSTFYFYHDVITLSKIAKLLGKEADY
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Known secondary structure (DSSP) TT
TTS




SSSS
S
TT
SS
TTS
TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence KYYSELADKIKSAFNKKFLKEKAYASSLGMFTSQTLNTLPLYLNLVPEDKVQDVLKTLLEDIIIRHDYHL
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Known secondary structure (DSSP) S
BTTB




S
S

TT
S
TTTTTTSS

 .........710.........720.........730.........740.........750.........760.........770
Sequence DTGIVATRYIFDVLTSYGYDEVAYKIVNQKTYPSFGYMIEEGATTLWERWEKLTSTGMNSHNHIMFGSVD
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Known secondary structure (DSSP)


TT
T

SSSSTT
SS

SSSS


SSSS

SS

GGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence AWFYRVIAGVRVGEPGWNKIIFEPHPVGDLKYAKARLNTIKGEVEINWQKTENIFSMRISVPVNSEGEVH
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Known secondary structure (DSSP) TTT
GGGT




TT

TT
SS

TT
 .........850.........860.........870.........880......
Sequence VPKLFERFVVKEGDNIIYEKKGDLEENEKYIVIRVGSGSYNFYMEK
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Known secondary structure (DSSP)

SSS
SSS
SSTTSS
SS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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