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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6hypA_

Fold library idPDB HeaderMoleculeTitle
c6hypA_4.40PDB header: motor proteinChain: A: PDB Molecule: midasin,midasin;


Added to library: Sat Dec 22 10:31:02 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)






SSSGGG



SST

TTTTSTT
SSSSSTTSTT

SGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) GGS
TT


SST

ST

SSSGGGSSS

S

 .........150.........160.........170.........180.........190.........200.........210
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVPECFTIEKKSSYFIIEP
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Known secondary structure (DSSP) TTTTSSS
SSSTTT

TTTS

SS









SS
TTT




SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QDLSTKVASICGVIVPKVHTIHDKVFYPLTFVPTHKTVSSLRQLGRKIQNSTPIMLIGKAGSGKTFLINE
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Known secondary structure (DSSP) SSTTSSSB

SSS
B


SSGGGS








SSTSSSS



SSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LSKYMGCHDSIVKIHLGEQTDAKLLIGTYTSFEWRAGVLATAVKEGRWVLIEDIDKAPTDVLSILLSLLE
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Known secondary structure (DSSP) TTTTSS

B

TTTSSSTTT




T

TTTS
TTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KRELTIPSRGETVKAANGFQLISTVRNLNMIGMRIWNVIELEEPSEEDLTHILAQKFPILTNLIPKLIDS
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Known secondary structure (DSSP) GGG
B

TTS

B


SS





STTTTT






TTSTTSS
TTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence YKNVKSIYMNTKFISLNKGAHTRVVSVRDLIKLCERLDILFKNNGINKPDQLIQSSVYDSIFSEAADCFA
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Known secondary structure (DSSP) TTTTTT
SS

S




TTTTSS


SS


TTTTSSTT

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GAIGEFKALEPIIQAIGESLTQHVPTLENLDDSIKIGRAVLMNSTLFAFTNHSLRLMEQISVCIQMTEPV
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Known secondary structure (DSSP)


STTTTTTGGGTS








S

SSS


SSS













SSTT
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence LLVGETGTGKTTVVQQLAKMLAKKLTVINVSQQTETGDLLGGYKPVNSKTVAVPIQENFETLFNATFSLK
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Known secondary structure (DSSP)

TT
TTTTSS



S

S
SS





STTSTT
TTS

SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence KNEKFHKMLHRCFNKNQWKNVVKLWNEAYKLLDKWADFNDSVKKFEAQSSSIENSFVFNFVEGSLVKTIR
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Known secondary structure (DSSP) TTSS





SS




SS







 .........710.........720.........730.........740.........750.........760.........770
Sequence AGEWLLLDEVNLATADTLESISDLLTEPDSRSILLSAEPIKAHPDFRIFACMNPATDVGKRDLPMGIRSR
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Known secondary structure (DSSP) SS
T

SS
TTSTTSS

S

B





B


SS



SS
TT
TTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence FTEIYVHSPERDITDLLSIIDKYIGKYSVSDEWVGNDIAELYLEAKKLSDNNTIVDGSNQKPHFSIRTLT
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Known secondary structure (DSSP)





S

TTSTTTS


S


TTTTSTTTSSTT
SSS


TTTSG
 .........850.........860.........870.........880.........890.........900.........910
Sequence RTLLYVTDIIHIYGLRRSLYDGFCMSFLTLLDQKSEAILKPVIEKFTLGRLKNVKSIMSQTPPSPGPDYQ
Predicted secondary structure
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Known secondary structure (DSSP) GGSSS
S

TTTTTTTTSSTTTTTTSTTTTTS
SS
SS


B

SS

B
SS







 .........920.........930.........940.........950.........960.........970.........980
Sequence AHYIITPFVEKNMMNLVRATSGKRFPVLIQGPTSSGKTSMIKYLADITGHKFVRINNHEHTDLQEYLGTY
Predicted secondary structure






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Known secondary structure (DSSP)

SS

TT
SS




SSS
TT





TT

SSTTT


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VTDDTGKLSFKEGVLVEALRKGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVHPHPDFLLFA
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Known secondary structure (DSSP)


TTS

S



SSTT


TTSSSS
SSTTTTTSSTTSSS

TTTT


SS


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TQNPPGIYGGRKILSRAFRNRFLELHFDDIPQDELEIILRERCQIAPSYAKKIVERLFEQKNSFATLRDL
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Known secondary structure (DSSP)



S
TTS



TTTSTTS




TT


STTGGG


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FRWAVGYEQLAASGYMLLAERCRTPQEKVTVKKTLEKVMKLEAIGSVTWTKGMRRLSVLVSSCLKNKEPV
Predicted secondary structure



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Known secondary structure (DSSP)



TTTTT
SSS





SS

SS


B
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LLVGETGCGKTTICQLLAQFMGRELITLNAHQNTETGDILGAQEWSDGPLIQAMRTGNFFLLDEISLADD
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Known secondary structure (DSSP)
B
S
TTSSSSS






SSS

S
B


B

S
ST
TTS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SVLERLNSVLEPERSLLLAESDSLVTASENFQFFATMNPGGDYGKKELSPALRNRFTEIWVPSMEDFNDV
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Known secondary structure (DSSP) TSTTTSS
SB









B

TT



TTSSSGGG

STTTSSSB






SS
SS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence NMIVSSRLLEDLKDLANPIVKFSEWFGKNATSGVISLRDILAWVEFINKVFPKIQNKSTALIQGASMVFI
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Known secondary structure (DSSP) TTSS
SS

S

SS

SSSTTTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence DALGTNNTAYLAENENDLKSLFNLTAPTTASNLVRVVRAMQVHKPILLEGSPGVGKTSLITALANITGNK
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Known secondary structure (DSSP) S

S





SSGGGTT
SB



TTSSSTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence LTRINLSEQTDLVDLFGAHDAPFLRAMKKGEWVLLDEMNLASQSVLEGLNACLDHRGEAYIISFSCHPNF
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Known secondary structure (DSSP)


BTTTS
STTTS




TTTTTTTTSSBT
SSS
SSTTTSSS






TT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LVFAAQNPKGLPKSFVNRFSVVFIDMLTSDDLLLIAKHLYPSIEPDIIAKMIKLMSTLEDQVCKRKLWGN
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Known secondary structure (DSSP)





TSS






TTTSS
SSS

TT
SS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence SGSPWEFNLRDTLRWLKLLNQYSICEDVDVFDFVDIIVKQRFRTISDKNKAQLLIEDIFGKFSTKENFFK
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Known secondary structure (DSSP)
SS




S
SSSSSS

SSGGGGTTTTTTS
SSGGGGS










 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence LTEDYVQINNEVALRNPHYRYPITQNLFPLECNVAVYESVLKAINNNWPLVLVGPSNSGKTETIRFLASI
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Known secondary structure (DSSP)

SS
TT


SS





S




SS
TT


SS
S
TT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LGPRVDVFSMNSDIDSMDILGGYEQVDLTRQISYITEELTNIVREIISMNMKLSPNATAIMEGLNLLKYL
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Known secondary structure (DSSP) T



SS

SSS
STTSS


 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LNNIVTPEKFQDFRNRFNRFFSHLEGHPLLKTMSMNIEKMTEIITKEASVKFEWFDGMLVKAVEKGHWLI
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Known secondary structure (DSSP) S


S
TTTS

SSGGGTS
S


T
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LDNANLCSPSVLDRLNSLLEIDGSLLIQPRVLKPHPNFRLFLTMDPKYGELSRAMRNRGVEIYIDELHSR
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Known secondary structure (DSSP) SSSSS
TTSGGGGGTTSSSSS











SS


TTS



GGGSSSS


 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence STAFDRLTLGFPDMSIPLKHYVPSYLSRPCIFAQVHDILLLSDEEPIEESLAAVIPISHLGEVGKWANNV
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Known secondary structure (DSSP)

TTTTTSS







TTSSS
TTSS
SS

TTTSSTTTS
STT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence LNCTEYSEKKIAERLYVFITFLTDMGVLEKINNLYKPANLKFQKALGLHDKQLTEETVSLTLNEYVLPTV
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Known secondary structure (DSSP) SS

S

TTTTTSS





SS



SSS
SST
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence SKYSDKIKSPESLYLLSSLRLLLNSLNALKLINEKSTHGKIDELTYIELSAAAFIFCILYNILTVMSENL
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Known secondary structure (DSSP)
SSS

SSSTTS
STT



S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence KTESLFCGSNQYQYYWDLLVIVIAALETAVTKDEARLRVYKELIDSWIASVKSKSDAIHDYVLYDLFLKT
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Known secondary structure (DSSP) TT

SS
SSS
TTSSS

SSTTTTTGGGT

 .........2250.........2260.........2270..
Sequence KTFSQNLMKSWRNVRKVISGDEEIFTEKLINT
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Known secondary structure (DSSP) S
SS

TTGGGS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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