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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6hv8A_

Fold library idPDB HeaderMoleculeTitle
c6hv8A_4.40PDB header: dna binding proteinChain: A: PDB Molecule: dna polymerase epsilon catalytic subunit a;


Added to library: Sat Dec 22 08:58:55 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SMIRKQAESYANSTWEVLQYKDSGEPGVLEVFVTINGKVQNITFHIPKTIYMKFKSQTMPLQKIKNCLIE
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Known secondary structure (DSSP)



S
SSS




TTTSTT

SSS
B


B










TTT

SS



 .........80.........90.........100.........110.........120.........130.........140
Sequence KSSASLPNNPKTSNPESVFLEEKENCTSIFNDENVLGVFEGTITPHQRAIMLSMAENERYLSGFSMDIGY
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SSSS








S




SS


SSSS







SS





















 .........150.........160.........170.........180.........190.........200.........210
Sequence LLHFPTSIGYEFFSLFKSWGDTITILVLKPSNQAQEINASSLGQIYKQMFEKKKGKIETYSYLVDIKEDI
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Known secondary structure (DSSP)

B

SSS

B


SS
S








TT




SSSTTTTTSS
SSSS




 .........220.........230.........240.........250.........260.........270.........280
Sequence NFEFVYFTDISKLYRRLSQETTKLKEERGLQFLLLLQSPFITKLLGTIRLLNQMPIVKLSLNEVLLPQLN
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TTT
S
S
SS

S

S

SS






S



S
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence WQPTLLKKLVNHVLSSGSWISHLIKLSQYSNIPICNLRLDSMDYIIDVLYARKLKKENIVLWWNEKAPLP
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Known secondary structure (DSSP) STTTTSS
SSSS
SSS

TTTTTTTS





SSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence DHGGIQNWIMNDSEFPKINNSGVYDNVVLDVGVDNLTVNTILTSSNDALNVLRGMLKEWWDEALKENSTA
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Known secondary structure (DSSP)
SS
S















S
SS





B


TTT


TTTTTSS

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence DLLVNSLASWVQNPNAKLFDGLLRYHVHNLTKKALLQLVNEFSALGSTIVYADRNQILIKTNKYSPENCY
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Known secondary structure (DSSP) TTTT
SSSSS

SSTSSS





SSSB





SSSTTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence AYSQYMMKAVRTNPMFSYLDLNIKRYWDLLIWMDKFNFSGLACIEIEEKENQDYTAVSQWQLKKFLSPIY
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Known secondary structure (DSSP) TTTTT
S







S
SS


SSSS







SSSS









TS


SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence QPEFEDWMMIILDSMLKTKQSYLKLNKEDSVENSLNGFSHLFSKPLMKRVKKLFKNQQEFILDPQYEASH
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Known secondary structure (DSSP) TTTTTT


SSSTTTSTTS
SS
STTTTTT


 .........640.........650.........660.........670.........680.........690.........700
Sequence LNVKNPLLELVKSLCHVMLLSKSTILEISLVVPDFLCEYCFFISDIDFCKFSCVRCHKAFNQVLLQEHLI
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Known secondary structure (DSSP) TT


SS
SS




TTT


S


B
SSS

B

TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence QKLRSDIESYLIQDLRCSRCHKVKRDYMSAHCPCAGAWEGTLPRESIVQKLNVFKQVAKYYGFDILLSCI
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Known secondary structure (DSSP) TT


SS





SS

SS
SSS


SS
T

 ....
Sequence ADLT
Predicted secondary structure
SS confidence



Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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