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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6hdaA_

Fold library idPDB HeaderMoleculeTitle
c6hdaA_3.80PDB header: transport proteinChain: A: PDB Molecule: nanobody,maltose/maltodextrin-binding periplasmic protein;


Added to library: Sat Aug 31 08:33:15 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QRQLVESGGGLVQPGGSLRLSCAASGSILYFNRMGWYRQAPGKQRELVAAITSGDSTNYADPVKGRFTIS
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Known secondary structure (DSSP)



B




TT


SS
GGG
S
TTS

TTS

TTTTTT
B

 .........80.........90.........100.........110.........120.........130.........140
Sequence RDNAKNTVYLQMNSLKPEDTAVYYCNAKEKGWSFSLYDYWGQGTPVTVVKLVIWINGDKGYNGLAEVGKK
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Known secondary structure (DSSP) TTTT
S

TT


SSS




B


TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDA
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Known secondary structure (DSSP) S

B



TTS


SGGGT
B





TTB
T
 .........220.........230.........240.........250.........260.........270.........280
Sequence VRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGN
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Known secondary structure (DSSP) TBSSS
B




TTT
SS

SBGGGTTT
BS




SSTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence AGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPS
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Known secondary structure (DSSP) TTSS
TT

TSBS
GGGTT




B
SSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence KPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQ
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Known secondary structure (DSSP)


BSS
S
TTSSS

SSBSTT
 .........430.........440.........450.........460.
Sequence KGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQT
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Known secondary structure (DSSP) S



TTTSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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