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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6hcgF_

Fold library idPDB HeaderMoleculeTitle
c6hcgF_4.30PDB header: protein transportChain: F: PDB Molecule: type ii secretion system protein d;


Added to library: Sat Nov 30 08:38:02 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVL
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Known secondary structure (DSSP)


BSS
BT


B

SS


B

B


S


SSS



SSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence KVVRAKDAKTSAVPVASAAAPGEGDEVVTRVVPLTNVAARDLAPLLRQLNDNAGAGSVVHYEPSNVLLMT
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Known secondary structure (DSSP) SS
SGGGS





SS



TTS




SS
TTTT

TTT




TT

 .........150.........160.........170.........180.........190.........200.........210
Sequence GRAAVIKRLLTIVERVDNAGDRSVVTVPLSWASAAEVVKLVTELNKDTSKSALPGSMVANVVADERTNAV
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Known secondary structure (DSSP)

TS




SSS
STTTTTTSS

SS
SSSSSSS

SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTGISSKNIIIKAHGQTNALIVTAA
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Known secondary structure (DSSP)
TTT



SS

SS

SSS
S


S





SSSS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence PDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYN
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Known secondary structure (DSSP) SSSTTT





TTS


STTS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence KDGTISSSLASALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTT
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Known secondary structure (DSSP) SS

TTS
GGGGT

SB



TT


SSS





 .........430.........440.........450.........460.........470.........480.........490
Sequence VERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGL
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Known secondary structure (DSSP)
B


STT

B
B


SS



SS




B




SS

 .........500.........510.........520.........530.........540.........550.........560
Sequence LDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLMLFIRPTIIRDRDEYRQASSGQYTAFNNAQTKQ
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Known secondary structure (DSSP)

TT
S
STTT

STTS
 .........570.........580.........590..
Sequence RGKESSEASLSNDLLHIQAFRQVSAAIDAFNL
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Known secondary structure (DSSP) S









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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