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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6h7vC_

Fold library idPDB HeaderMoleculeTitle
c6h7vC_2.54PDB header: membrane proteinChain: C: PDB Molecule: ligand-gated channel protein;


Added to library: Sat Oct 13 11:56:56 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DTYAGGQVATSSNVGFLGSKKFLDTPFNTISYTDKYIEDKQAKDITEVIAATDPSIYTNGASGGWSENYY
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Known secondary structure (DSSP)
B
TTSSBBS
GGG
GGG
SS
T
SSSSS
TT



SSBSS


 .........80.........90.........100.........110.........120.........130.........140
Sequence IRGYASSTNDXSXNGLFGITPFYRTSPEXFGRVEVLKGPSALLNGXPPAGSVGGTVNLVTKYAADEPFAR
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Known secondary structure (DSSP) TT

GGG
TTS
S
SS



TTS




TT


S



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LTTTYXSDAQFGGHVDVGRRFGENKEFGVRINGXYRDGDAAVNDQSKESRLFSLGLDWQGENARVFVDAY
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Known secondary structure (DSSP) TTTSTTS

SSTT

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DALDHVDGVTRGVNVSTAVGIPKPPKADTLLSPDWGSVETKDKGAXIRGEYDFSDQLXAYAAYGQSTTEY
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Known secondary structure (DSSP) S
B



TTT






TT


S
TT
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KYNGASAGTITSSTGTLSSTLGQLAFDVDKKSADAGFKGKFETGSVKHQWVANATYYNHTQDDYSYRIIP
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Known secondary structure (DSSP)
STT
TTSS
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence GFSDPVITNIYDPNPNWGPKPEFTPPFLFHSTLSTSSFGLADTLSFAQDKVQLTLGLRHQTVKATSSVNT
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Known secondary structure (DSSP) T

S
TT
SS











TTTTTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence LPENAKSATTPGVALLIKATDKISVYANYIEGLTKGDQAPATASNPGEIFPPQKTKQQELGLKVDLGTFA
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Known secondary structure (DSSP) S



SSSS


B

SSSSSTT
B



SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence HTLSAFEITKPSSYLDPSKLVNNLPTFVSDGEQRNRGIEWSFFGSPIEHVRLXGGFTYLDPELTKTKSGG
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Known secondary structure (DSSP) TT
SSTT
GGGT
 .........570.........580.........590.........600.........610.........620.........630
Sequence NDGHTAVAVPKNQAKLGAEWDTQVAQGTLTLSGNINAVSKQYINAENTLSVPGRTLLDVGARYSTKVEDH
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Known secondary structure (DSSP) TTT
BS

STT

SSTTS



TT
 .........640.........650.........660.........670.
Sequence PVTFRANIYNLTNKAYWAQPQLTNLALGAPRTYXLSVSYDF
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Known secondary structure (DSSP) STT





SSSSB





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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