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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6h3iA_

Fold library idPDB HeaderMoleculeTitle
c6h3iA_3.50PDB header: protein transportChain: A: PDB Molecule: protein involved in gliding motility spra;


Added to library: Sat Nov 10 08:31:23 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SNTIDVKPTGSVEMDLGVRYTKQDNPAFSPRNRSSLTFDFDQRISMSLMGKIGTRLEVNANYDTQFQNLF
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Known secondary structure (DSSP)





S
B




TTS
SSSSS

B


GGGT





 .........80.........90.........100.........110.........120.........130.........140
Sequence KLAYTPSIIQKVEVGNVSMPLNSTLIRGAQSLFGVKTQLQFGRTTITGVFSEQKSQTKSVVAENGGTVQN
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Known secondary structure (DSSP)








SS






SSS


SS



SSS









SSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence FDLYALDYDNDRHFFLSQYFRNKYDVSLKNYPFIDSRVQITRLEVWVTNKQNRVTTTGGGNNLRNIIALQ
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Known secondary structure (DSSP)

SS



TTS
TTBTTB
S






S



STTS





BS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DLGEAQVSGVPDNEVVVISSTAGFFNNPIDSPTSNTNNKYDPATIGQAGSFLNSNIREIVTAKSGFNNTN
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Known secondary structure (DSSP) SSS



SSS
GGGT


S

TTTB
S
SS



GGGBTT
TTSSSSSS
S

SSTTSSSSGGGS
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VSEATDYSVLENARKLTTNEYTFNPQLGYISLQQRLANDEILAVAFEYTVGGKVYQVGEFGSDGVDATVV
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Known secondary structure (DSSP)

TTTTB





TTS

B
TTT

SS


SS


STT



SS

TTTS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence TGNNSSNQAIITQSLVLKMLKSNLTNVKNPVWNLMMKNVYQIPQAYQIKQDDFRLNILYTDPSPINYITP
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Known secondary structure (DSSP)

SSTTT








SS

SSSB




TT

S

TTS
SSSSB


 .........430.........440.........450.........460.........470.........480.........490
Sequence VQGSSFPPNPAPDSKVEQTPLLNVFNLDRLNYNNDPQAGGDGFFDYIPGVTVDVQNGRVIFTTKEPFGEL
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Known secondary structure (DSSP)
SS



SS

TTT
TTT
BTT


B
TTSSB
SS

SS



TTTTB
TTS


SSSSTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence IFNKLQTGAGESYNDPTTYNANQQKYVFRNMYRNTQAGALQDSDKNKFLLRGKYKSSGSNGIPIGAFNVP
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Known secondary structure (DSSP)

SSS

TT
TTS

SSTTSS

GGGTSS
SSTTSS

TT







SSSB

S
SS

 .........570.........580.........590.........600.........610.........620.........630
Sequence QGSVVVTAAGRVLVEGIDYSVDYQLGRVQILDPSLQASNTPIEVSLENNSIFGQQTRRFMGFNIEHKISD
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Known secondary structure (DSSP) TT

SSSSB

TTTT

SSS

B

TS









SS



TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence KFVIGGTYLKMTERPFTQKSTYGQESVNNTIFGFNGNYSTEVPFLTRLANKLPNIDTDVPSNLSIRGEVA
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Known secondary structure (DSSP) T


SSSS

SSS







B

B
TSSS






B


 .........710.........720.........730.........740.........750.........760.........770
Sequence FLRPDAPKASDFQGEATIYVDDFEGSQSTIDMRSAYAWSLASTPFITSINDNTFNANSNTLEYGFKRAKL
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Known secondary structure (DSSP)



GGG
SSSS



TT
TTS




TTT
B





SSSSS

TT
TT

SSTTSTTB


 .........780.........790.........800.........810.........820.........830.........840
Sequence SWYTIDPVFYSSKPSGISNDDLSLNTTRRIYSRELYPNTDIAQGQIQVVNTLDLTYYPGERGPYNNNPSF
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Known secondary structure (DSSP)


S

TT

TTTTTSSSSS

B
TTS


TTS

B



B
TTS

SS


S

 .........850.........860.........870.........880.........890.........900.........910
Sequence GASNPSANFGGIMRALNSTNFEQGNVEYIQFWVLDPYVGNGESPATNAGKIYFNLGEISEDVLKDGRKQY
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Known secondary structure (DSSP) SSS
GGG
B



S


T
SSSTTS


SS

SB



SS
SSS


 .........920.........930.........940.........950.........960.........970.........980
Sequence ENGLGPDQVMVNPQPLWGDVPASQSLIYAFDTNPDNRKNQDVGLDGLPSSREGSIYGDDYTYYLNADGGV
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Known secondary structure (DSSP) TTS
STTS
B
SS

SSS

B
S



S


S

B
SSS

SSSSTTT


B


TTTS
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LERYKNYNGTEGNSAVSINDPNRGSTTLPDVEDINRDNTMSTINAYYEYSIDVKPGMQVGENYITDIREV
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Known secondary structure (DSSP) TTSTT
SBTTT
SSTTSSS

S
SS


S
SSSSSS










S


SSSSS



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TNVDLPNGGTTNARWIQFKIPVSQPQNTIGNITDFRSIRFMRMFMTGFNSQMTVRFGALDLVRGEWRRYT
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Known secondary structure (DSSP)


TTS



TTS
S


SS

STTS
B
S

S
B


BS


SS
B

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GTLDDGVEFDVAAVNIQENGTKCPVNYVMPPGVQREQLYNNNTVINQNEQALAVRIGGAGLQYQDSRAVF
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Known secondary structure (DSSP) S



S

BTTTSTTBSSS




TT





BSSSSB




B

T
B
SS

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence KNVSVDMRQYKKLKMFLHAESLPNQPTLEDDEMVGFIRFGNDFTQNFYQVEIPLKVTKTGGSCSISPDLV
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Known secondary structure (DSSP)





SS
SBB

B



TTS



SSS
B




SS
SSSS



B






S
S


 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence WMDDNSIDLALDLLTRMKIKAMSIDINSSKRDVNGIYYPDGKLTLGIKGNPNFGLVRNLMVGVKSRADHK
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Known secondary structure (DSSP) S
SSSB


BTS
SSSSSS
SSS









SS


SS







TT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence DIKGEVWFNELRLADLENKGGMAAILNVDTNMADFATVSATGRKSTIGFGSLEQGANERDREDVQQYNIV
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Known secondary structure (DSSP)
B





B






B
B



TTS



TT


TT

SSSS

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence TNLNLGKLLPKKWGINLPFNYAIGEEVITPEYDPFNQDIKLDQLIRETTDQAEKDNIRTRAIDYTKRKSI
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Known secondary structure (DSSP)

GGGGS
STT
B




SB
SSSTTSBTT
S
TTTTTSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence NFIGVRKDRDIENFTFSQSYNQVERHDYEVADYEDEQSNSAVNYAYTFQPYLPSNISFNTNILRQSNRQQ
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Known secondary structure (DSSP)
TT

B



S





SS










BS



B
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence FREVEVEGIGLDPLYRRNFAFNYQYGFGFNLTKSLKLNYSATSNNIVRNFLDNSPKEDFNIWDDYLDIGT
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Known secondary structure (DSSP)

SSSSSS
S







B

BTTB





TT


S

TT

TTSS
S



 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence PNQHAQQLVLNYDIPINKIPIFGFVKASYSYTADYMWQRSSTAFSEYEDPNGTVYDLGNTIQNSNSNTLT
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Known secondary structure (DSSP)



SSSTTSTT





TT
B
TTS
B





 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence TTLNMNTSIKNVQINYTKNSGTVLPGYTPSVGFLGTSKPSLGFVFGSQDDVRYEAAKRGWLTTYQDFNQS
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Known secondary structure (DSSP)



















SS


SS
TTGGGT

SS
SSS
S


SS



 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence FTQVSNKLLKVTANIDLLPDLKVDLSMDRSYSENTSEQYSVDPSTNEYKPLSPYTYGMFSISTVMIKTAF
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Known secondary structure (DSSP)
B





SSS









SSS










GGGS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence SPSDETQSAAFDDFRSNRLIIANRLAEGHYGSGVAIPRYGDANNPIPAETDPNYAVYTANQGYPIGYTKS
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Known secondary structure (DSSP) S

SSS

TTS
GGG



SSSTTS



SSSTTSS
SS
TT

TT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence NQAVLLPAFLAAYTGSDASSSSTNIFRSFPIPNWSIKYNGLMRKFKRFSLQHNYRASYTINQFRSNFDYN
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Known secondary structure (DSSP)
TT

TTSS


SS
SS





TT



S




SSSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence SSPKVQDVNTNFYNEIIMSNVNLVEQFSPLIRMDFELKSSLRVLSEIKKDRALSMSFDNNLLTEVKGMEY
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Known secondary structure (DSSP) SSS



SSS



SS



SSSS


SSS



BTTTT


 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence IIGLGYRFKDVSDINIKADFSLRNNETLVRYLDYDNNQLAAGQNIWSLKLTADYSFSKNLTAIFYYDHSF
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Known secondary structure (DSSP)






SSS


B




SSSS
 .........2110.........2120....
Sequence SKAVISTSFPLTNIRSGFTLRYNF
Predicted secondary structure









SS confidence























Known secondary structure (DSSP)


SSTTS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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