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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6gmlV_

Fold library idPDB HeaderMoleculeTitle
c6gmlV_3.20PDB header: transcriptionChain: V: PDB Molecule: negative elongation factor b;


Added to library: Sat Sep 8 08:26:39 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLQSALPFLDLHGTPRLEFHQSVFDELRDKL
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Known secondary structure (DSSP)



TSSS





SSS
TSS

T
 .........80.........90.........100.........110.........120.........130.........140
Sequence LERVSAIASEGKAEERYKKLEDLLEKSFSLVLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKR
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Known secondary structure (DSSP) TTTTS






S
TTTTT
TTSTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QIWQDNQALFGDEVSPLLKQYILEKESALFEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLR
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Known secondary structure (DSSP) TTTTSTTTT

TTS

T
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AELLMSLHDLDVCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLAL
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Known secondary structure (DSSP) TT
TTT



SS

S



SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence STVRHLQELVGQETLPLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELITRFLPMLMSFLVDDYTFNPES
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Known secondary structure (DSSP) T




TSTTSSS






TTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence FTKFLQEQRMACEVGLYYVLHIKNALLRLLPGLVETFGDLAFGDIFLHLLTGNLALLADEFALEDFCSSL
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Known secondary structure (DSSP) S


STT

TTT

ST

 .........430.........440.........450.........460.........470.........480...
Sequence FDGFFLTASPRKENVHRHALRLLIHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKL
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Known secondary structure (DSSP) TT
SS

S

SSTTTTTTSS

ST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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