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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6gczA_

Fold library idPDB HeaderMoleculeTitle
c6gczA_1.80PDB header: sugar binding proteinChain: A: PDB Molecule: starch-binding associating with outer membrane;


Added to library: Sat Oct 20 08:54:47 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YKNETEAYAGLVAVYDVMRKYSGGFENTVSFLNAGSDDHVAGGGSSSDGAGIQGFSNFTINPTIMPRSYW
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Known secondary structure (DSSP)

SGGGGGGTSSSS
TSTTB

BSSSTTSSTT


TTTS
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence SDFYQGIFRANVLLTKLPDVPMDESQIMRFTAETKALRALYYFNLVNMFRNVPLITEPLEPSEFNSVLQA
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Known secondary structure (DSSP) GGG
SS
S

B


S




B
 .........150.........160.........170.........180.........190.........200.........210
Sequence DPSAVYTQIEQDLNEAIGNLPDIISDDQKGRFSNGSAKALLGKVYLYQGKNQQAAAVLQEVNGTPGQTSQ
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Known secondary structure (DSSP)
TTSS
SS

GGGTTS

TT

STTS

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence YGYKLLDNYDELWTVSNKFNSESILEVAHTNASGSGWGNWGQGTDEGNSINVMLGPRSYNQITEEAPDLP
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Known secondary structure (DSSP) TS



SSGGGGG
TT
TT
TT


STT


GGGTTSTT

S
STS

STTS



 .........290.........300.........310.........320.........330.........340.........350
Sequence SGWSFNPVLPELYDLLEGDPRFEATILDLKALEEAGAASYVPGYQDTGYFLNKFIPRVTDVTTLTGEPVL
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Known secondary structure (DSSP)



BS
B
TTSTTTTS

TT

SGGG


GGGS

SSS
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence NYRQNTYVIRLADTYLMEAEALGGSGARAQALLDAVRARVGLPSTPVSLTAIAKERRLELAGEGHRFYDL
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Known secondary structure (DSSP)




TTT
STT






STTSS
 .........430.........440.........450.........460.
Sequence VRTGKAAEALSDRGFKAGVNEILPIPFQELQSTQIVQNPGY
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Known secondary structure (DSSP) TT
GGGT

TTTTTS



GGGTTTSS



TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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