PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6gauB_

Fold library id	PDB Header	Molecule	Title
c6gauB_	3.30	PDB header: dna binding protein	Chain: B: PDB Molecule: dna gyrase subunit b,dna gyrase subunit a;

Links to external resources
Added to library: Sat Feb 23 08:43:28 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I G S T G E R G L H H L I W E V V D N A V D E A M A G Y A T T V N V V L L E D G G V E V A D D G R G I P V A T H A S G I P T V D V V M T Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T
S S S
S S
S B
S S S S B T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G V S V V N A L S T R L E V E I K R D G Y E W S Q V Y E K S E P L G L K Q G A P T K K T G S T V R F W A D P A V F E T T E Y D F E T V A R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T
S
S
T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L Q E M A F L N K G L T I N L T D E R V T Q D E V V D E V V S D V A E A P V K S R T F H Y P G G L V D F V K H I N R T K N A I H S S I V D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
S
S S
S S
S S
T T T T B S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S G K G T G H E V E I A M Q W N A G Y S E S V H T F A N T I N T H E G G T H E E G F R S A L T S V V N K Y A K D R G D D I R E G L A A V I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B S S S S
T T
S
B T T T T T T
T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V K V S E P Q F E G Q T K T K L G N T E V K S F V Q K V C N E Q L T H W F E A N P T D A K V V V N K A V S S A Q A R I A A R K S A T D I G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
B
S S S S
S B
S
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence L P G K L A D C R S T D P R K S E L Y V V E G D S A G G S A K S G R D S M F Q A I L P L R G K I I N V E K A R I D R V L K N T E V Q A I I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
B
S
G G G
S
T T T
S
T T T S
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence A L G T G I H D E F D I G K L R Y H K I V L M A D A D V D G Q H I S T L L L T L L F R F M R P L I E N G H V F L A Q P P L Y K L K W Q R S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
G G G
S
S
S S T T T
S
B S S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence P E F A Y S D R E R D G L L E A G L K A G K K I N K E D G I Q R Y K G L G E M D A K E L W E T T M D P S V R V L R Q V T L D D A A A A D E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
B
S S S S
T T S S
T
T T T
S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence F S I L M G E D V D A R R S F I T R N A K D I E P V D I E Q E M Q R S Y I D Y A M S V I V G R A L P E V R D G L K P V H R R V L Y A M F D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T
T
B T T T
T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence G F R P D R S H A K S A R S V A E T M G N Y H P H G D A S I Y D S L V R M A Q P W S L R Y P L V D G Q G N F G S P G N D P P A A M R Y T E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
T
S
T T T
S S
S S
B
S S S
B
T T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence R L T P L A M E M L R E I D E E T V D F I P N Y D G R V Q E P T V L P S R F P N L L A N G S G G I A V G M A T N I P P H N L R E L A D A V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G T
S
T T S S S S S
S S
T T
B

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence W A L E N H D A D E E E T L A A V M G R V K G P D F P T A G L I V G S Q G T A D A Y K T G R G S I R M R G V V E V E E D S R G R T S L V I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
B
S B
T T
S S S
S S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence E L P Y Q V N H D N F I T S I A E Q V R D G K L A G I S N I E D Q S S D R V G L R I V I E I K R D A V A K V V I N N L Y K H T Q L Q T S F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S S
S
S S S
S S S
S S T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence A N M L A I V D G V P R T L R L D Q L I R Y Y V D H Q L D V I V R R T T Y R L R K A N E R A H I L R G L V K A L D A L D E V I A L I R A S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence T V D I A R A G L I E L L D I D E I Q A Q A I L D M Q L R R L A A L E R Q R I I D D L A K I E A E I A D L E D I L A K P E R Q R G I V R D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T
G G G G S

. . . . . . . . . 1060 . . . . . . . .

Sequence L A E I V D R H G D D R R T R I I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	G	S	T	G	E	R	G	L	H	H	L	I	W	E	V	V	D	N	A	V	D	E	A	M	A	G	Y	A	T	T	V	N	V	V	L	L	E	D	G	G	V	E	V	A	D	D	G	R	G	I	P	V	A	T	H	A	S	G	I	P	T	V	D	V	V	M	T	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S																				T	T	T											S	S	S								S	S					S	B		S	S	S	S	B						T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	V	S	V	V	N	A	L	S	T	R	L	E	V	E	I	K	R	D	G	Y	E	W	S	Q	V	Y	E	K	S	E	P	L	G	L	K	Q	G	A	P	T	K	K	T	G	S	T	V	R	F	W	A	D	P	A	V	F	E	T	T	E	Y	D	F	E	T	V	A	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T						T											T	T									T	T									S				S											T	T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	Q	E	M	A	F	L	N	K	G	L	T	I	N	L	T	D	E	R	V	T	Q	D	E	V	V	D	E	V	V	S	D	V	A	E	A	P	V	K	S	R	T	F	H	Y	P	G	G	L	V	D	F	V	K	H	I	N	R	T	K	N	A	I	H	S	S	I	V	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	T	T								S				S	S					S	S			S	S													T	T	T													T	B	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	G	K	G	T	G	H	E	V	E	I	A	M	Q	W	N	A	G	Y	S	E	S	V	H	T	F	A	N	T	I	N	T	H	E	G	G	T	H	E	E	G	F	R	S	A	L	T	S	V	V	N	K	Y	A	K	D	R	G	D	D	I	R	E	G	L	A	A	V	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S										B	S	S	S	S								T	T					S		B															T	T	T	T	T	T							T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	K	V	S	E	P	Q	F	E	G	Q	T	K	T	K	L	G	N	T	E	V	K	S	F	V	Q	K	V	C	N	E	Q	L	T	H	W	F	E	A	N	P	T	D	A	K	V	V	V	N	K	A	V	S	S	A	Q	A	R	I	A	A	R	K	S	A	T	D	I	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S			B		S	S	S	S		S	B																																																		S				S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	L	P	G	K	L	A	D	C	R	S	T	D	P	R	K	S	E	L	Y	V	V	E	G	D	S	A	G	G	S	A	K	S	G	R	D	S	M	F	Q	A	I	L	P	L	R	G	K	I	I	N	V	E	K	A	R	I	D	R	V	L	K	N	T	E	V	Q	A	I	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S		B			S				G	G	G																			S		T	T	T								S					T	T	T	S								S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	A	L	G	T	G	I	H	D	E	F	D	I	G	K	L	R	Y	H	K	I	V	L	M	A	D	A	D	V	D	G	Q	H	I	S	T	L	L	L	T	L	L	F	R	F	M	R	P	L	I	E	N	G	H	V	F	L	A	Q	P	P	L	Y	K	L	K	W	Q	R	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	T	T	S			G	G	G		S		S								S	S																		T						T	T									S					B	S	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	P	E	F	A	Y	S	D	R	E	R	D	G	L	L	E	A	G	L	K	A	G	K	K	I	N	K	E	D	G	I	Q	R	Y	K	G	L	G	E	M	D	A	K	E	L	W	E	T	T	M	D	P	S	V	R	V	L	R	Q	V	T	L	D	D	A	A	A	A	D	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S														T	T			B		S	S	S	S							T	T	S	S										T		T	T	T									S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	F	S	I	L	M	G	E	D	V	D	A	R	R	S	F	I	T	R	N	A	K	D	I	E	P	V	D	I	E	Q	E	M	Q	R	S	Y	I	D	Y	A	M	S	V	I	V	G	R	A	L	P	E	V	R	D	G	L	K	P	V	H	R	R	V	L	Y	A	M	F	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S												T	T																												T			B	T	T	T																T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	G	F	R	P	D	R	S	H	A	K	S	A	R	S	V	A	E	T	M	G	N	Y	H	P	H	G	D	A	S	I	Y	D	S	L	V	R	M	A	Q	P	W	S	L	R	Y	P	L	V	D	G	Q	G	N	F	G	S	P	G	N	D	P	P	A	A	M	R	Y	T	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			S	S	S																T			S															T	T	T		S	S		S					S		B			S	S	S			B			T	T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	R	L	T	P	L	A	M	E	M	L	R	E	I	D	E	E	T	V	D	F	I	P	N	Y	D	G	R	V	Q	E	P	T	V	L	P	S	R	F	P	N	L	L	A	N	G	S	G	G	I	A	V	G	M	A	T	N	I	P	P	H	N	L	R	E	L	A	D	A	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	G	G	G	T		S						T	T	S	S	S				S	S				S	S													T	T								B
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	W	A	L	E	N	H	D	A	D	E	E	E	T	L	A	A	V	M	G	R	V	K	G	P	D	F	P	T	A	G	L	I	V	G	S	Q	G	T	A	D	A	Y	K	T	G	R	G	S	I	R	M	R	G	V	V	E	V	E	E	D	S	R	G	R	T	S	L	V	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T		S														B		S	B			T	T							S									S	S																S	S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	E	L	P	Y	Q	V	N	H	D	N	F	I	T	S	I	A	E	Q	V	R	D	G	K	L	A	G	I	S	N	I	E	D	Q	S	S	D	R	V	G	L	R	I	V	I	E	I	K	R	D	A	V	A	K	V	V	I	N	N	L	Y	K	H	T	Q	L	Q	T	S	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T																T	T	S	S		S										S	S	S										S	S	S												S	S	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	A	N	M	L	A	I	V	D	G	V	P	R	T	L	R	L	D	Q	L	I	R	Y	Y	V	D	H	Q	L	D	V	I	V	R	R	T	T	Y	R	L	R	K	A	N	E	R	A	H	I	L	R	G	L	V	K	A	L	D	A	L	D	E	V	I	A	L	I	R	A	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T																																																	T												S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	T	V	D	I	A	R	A	G	L	I	E	L	L	D	I	D	E	I	Q	A	Q	A	I	L	D	M	Q	L	R	R	L	A	A	L	E	R	Q	R	I	I	D	D	L	A	K	I	E	A	E	I	A	D	L	E	D	I	L	A	K	P	E	R	Q	R	G	I	V	R	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S												S												T			G	G	G	G	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.
Sequence	L	A	E	I	V	D	R	H	G	D	D	R	R	T	R	I	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S