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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6fwkB_

Fold library idPDB HeaderMoleculeTitle
c6fwkB_2.50PDB header: dna binding proteinChain: B: PDB Molecule: dna polymerase epsilon catalytic subunit a;


Added to library: Sat Feb 2 08:44:06 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YALSAQQLLNASKIDDIDSMMGFERYVPPQYNGRFDAKDIDQIPGRVGWLTNMHATLVSQENQGISGVDF
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Known secondary structure (DSSP)
TT

B






S


GGGGGGS







 .........80.........90.........100.........110.........120.........130.........140
Sequence YFLDEEGGSFKSTVVYDPYFFIACNDESRVNDVEELVKKYLESCLKSLQIIRKEDLTMDNHLLGLQKTLI
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Known secondary structure (DSSP) TTS



S
GGGTTTT

B
TTSTTGGGT

 .........150.........160.........170.........180.........190.........200.........210
Sequence KLSFVNSNQLFEARKLLRPILQDNANNNVQRNIYNVVDAKHLIEDIREYDVPYHVRVSIDKDIRVGKWYK
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Known secondary structure (DSSP)
SSS



S
TT



GGGGS
S

T

TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VTQQGFIEDTRKIAFADPVVMAFDIETTKPPLKFPDSAVDQIMMISYMIDGEGFLITNREIISEDIEDFE
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Known secondary structure (DSSP) TT
TT

S







TTS


TTT

TTTTT
SS



 .........290.........300.........310.........320.........330.........340.........350
Sequence YTPKPEYPGFFTIFNENDEVALLQRFFEHIRDVRPTVISTFNGDFFDWPFIHNRSKIHGLDMFDEIGFAP
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Known secondary structure (DSSP)

SSTTS

SS

SSSTTTTTT

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence DAEGEYKSSYCSHMDCFRWVKRDSYLPQGSQGLKAVTQSKLGYNPIELDPELMTPYAFEKPQHLSEYSVS
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Known secondary structure (DSSP)
TTS
SSSS


GGG
ST
S





GGGSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence DAVATYYLYMKYVHPFIFSLCTIIPLNPDETLRKGTGTLCEMLLMVQAYQHNILLPNKHTDPIERFYDGH
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Known secondary structure (DSSP) TTTSSS
S
TTB








SS
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LLESETYVGGHVESLEAGVFRSDLKNEFKIDPSAIDELLQELPEALKFSVEVENKSSVDKVTNFEEIKNQ
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Known secondary structure (DSSP)






TTS


TTSS

GGGS
 .........570.........580.........590.........600.........610.........620.........630
Sequence ITQKLLELKENNIRNELPLIYHVDVASGYPNIMTTNRLQPDSIKTCARKLKWAWRGEFFPSKMDEYNMIK
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Known secondary structure (DSSP)


TTTT

GGGB



S

 .........640.........650.........660.........670.........680.........690.........700
Sequence RALQNETFPNLTFDELSYADQVIHIKKRLTEYSRKVSEIVEREAIVCQRENPFYVDTVKSFRDRRYEFKG
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Known secondary structure (DSSP) SS





STTS


-


SSS

 .........710.........720.........730.........740.........750.........760.........770
Sequence LAKTWKGNLSKIDPSDKHARDEAKKMIVLYDSLQLAHKVILNSFYGYVMRKGSRWYSMEMAGITCLTGAT
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Known secondary structure (DSSP) TS
TT
TT
TT
SS

 .........780.........790.........800.........810.........820.........830.........840
Sequence IIQMARALVERVGRPLELDTDGIWCILPKSFPETYFFTLENGKKLYLSYPCSMLNYRVHQKFTNHQYQEL
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Known secondary structure (DSSP) STTTTS

TTS
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence KDPLNYIYETHSENTIFFEVDGPYKAMILPSSKEEGKGIKKRYAVFNEDGSLAELKGFELKRRGELQLIK
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Known secondary structure (DSSP) TTTT



S


SSSS



S

TTS
S
TTTSTT
B
 .........920.........930.........940.........950.........960.........970.........980
Sequence NFQSDIFKVFLEGDTLEGCYSAVASVCNRWLDVLDSHGLMLEDEDLVSLICENRSMSKTLKEYEGQKSTS
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Known secondary structure (DSSP) TT

SSTTTTTS
T

SS
GGGGTT


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence ITTARRLGDFLGEDMVKDKGLQCKYIISSKPFNAPVTERAIPVAIFSADIPIKRSFLRRWTLDPSLEDLD
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Known secondary structure (DSSP)
GGGTSSS

BS
STTS
GGG
GGGGGS
T
TT




 .........1060.........1070.........1080.........1090.........
Sequence IRTIIDWGYYRERLGSAIQKIITIPAALQGVSNPVPRVEHPDWLKRKIA
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Known secondary structure (DSSP) B
TTT


S
TTS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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