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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6fqlA_

Fold library idPDB HeaderMoleculeTitle
c6fqlA_2.35PDB header: rna binding proteinChain: A: PDB Molecule: e3 ubiquitin-protein ligase trim71;


Added to library: Sat May 12 11:06:38 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SSGAFATASKAHGEGIKRALQGKPASFTVVGYDHDGEPRLSGGDSVSVVLMSPDGNLSSAEVSDHQDGTY
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Known secondary structure (DSSP)

S

GGG
SGGGTTTS

B
TTS
B
S





TTS


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TVSYLPKGEGEHLLSVLICNQHIEGSPFKVMVKSGRSYGGVGLPMASFGGEGDGDGQLCRPWGICVDKEG
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Known secondary structure (DSSP)


S
TT
TT
S




TTTTS
S
BSSSTT
BSS



TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence YVVVADRSNNRVQIFKPCGTFHHKFGTLGSRPGQFDRPAGVACDSQRRIIVADKDNHRIQIFTFDGQFLL
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Known secondary structure (DSSP)
GGGT
TTS


BSSSTT
BSS
TT

GGGT
TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence KFGEKGTKNGQFNYPWDVAVNFEGKILVSDTRNHRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQE
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Known secondary structure (DSSP)

BSSSTT
BSS
TT

GGGT
TT



GGGGGGG


TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVFEPNGNFL
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Known secondary structure (DSSP)

TTTT
TTSS

SSSTTSS
TTS
GGGT
TTS
 .........360.........370.........380.........390
Sequence CKFGTHGNGFGQMDRPSGIAVTPDGVIVAVDFGNNRILMF
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Known secondary structure (DSSP)
SSSTTSS
TT

GGGT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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