Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6flqF_

Fold library idPDB HeaderMoleculeTitle
c6flqF_4.10PDB header: transcriptionChain: F: PDB Molecule: transcription termination/antitermination protein nusa;


Added to library: Sat Mar 24 08:29:13 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQ
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)

ST

TTTSSS
TTSSS



SSS




B
SS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITG
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) GGG
B
TTTTT
S
TT










TTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFR
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TT
STT
TTTS
SS



TT




TTS


TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence IEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)
TTSTTTSSS



GGGTTTS



SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence AQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TT
SS

STTTT

SSSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)



SSTTSSTTSS
GGGGTTSSS

ST
 .........430.........440.........450.........460.........470.........480.........490
Sequence QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICW
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) TTT


T
TT

TTT

SS
TTSTTS
 .....
Sequence FGDEA
Predicted secondary structure




SS confidence




Known secondary structure (DSSP) TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D