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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6f3tD_

Fold library idPDB HeaderMoleculeTitle
c6f3tD_2.50PDB header: transcriptionChain: D: PDB Molecule: transcription initiation factor tfiid subunit 5;


Added to library: Sat Dec 8 12:00:02 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDD
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Known secondary structure (DSSP)

GGGS
GGGTT
GGGS
GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence LRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRS
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Known secondary structure (DSSP)


T
S
SGGGSS



 .........150.........160.........170.........180.........190.........200.........210
Sequence KQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRL
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Known secondary structure (DSSP)


SSBS

GGGG
S



S







TTS

TTSS





T



 .........220.........230.........240.........250.........260.........270.........280
Sequence GPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDV
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Known secondary structure (DSSP) BTTB



TT
TTS
TTS

SS
SSS



TSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF
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Known secondary structure (DSSP) T
TTS





SS

TTSSTTSTTT
SS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVR
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Known secondary structure (DSSP)
TTSSTTSTT
SS
S

SS

TTSSTTSTTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence IFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDN
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Known secondary structure (DSSP)

SS

TTSSTTS
TTTT


SS

TTSSTTT
 .........500.........510.........520.........530.........540.........550
Sequence TVRLWDAIKAFEDLETGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ
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Known secondary structure (DSSP) T
S








S

TTS

TT







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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