PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6f2pA_

Fold library id	PDB Header	Molecule	Title
c6f2pA_	2.60	PDB header: lyase	Chain: A: PDB Molecule: paenibacillus xanthan lyase;

Links to external resources
Added to library: Sat Dec 8 08:51:27 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P R A D E F D T L R E K Y K A M L N G G T T Y N L S D P D I A A R V N A I T V T A Q G Y W D S M L K D P N R N R L W N D A P F G S D S T S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T S T
S T T
S
S
T T S
S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T T T Y R H L Y D M A L A Y T T Y G S S L Q G N A A L K A D I I S G L D W M N A N Q F Y N G C S Q Y Q N W W H W Q I G G P M A L N D I V A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T
T S S T T
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M Y T E L T A T Q I S N Y M A A I Y Y T Q A S V T M T G A N R L W E S Q V I A I S G I L N K D S A R V A A G R D G I S A L L P Y V A K G D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S
S
T T
T G G G S S
S S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence F Y N D G S F V Q H T Y Y A Y N G G Y G S E L L S G I A D L I F I L N G S S W Q V T D P N K N N V Y R W I Y D S Y E P F I Y K G N L M D M V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T T
T T T T T S T T
T T T G G G T T
G G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R G R E I S R H G L Q D D K A A V T V M A S I I R L S Q T A A S A D A T A F K R M V K Y W L L L D T D K T F L K A V S I D L I I A A N Q L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G G G
G G G
T T S
T T
T T T T T S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence N D S T V T S R G E L V K Y K Q F S G M D R A V Q L R P G F G F G L S M F S S R I G N Y E S I N A E N N K G W H T G D G M T Y L Y N T D L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T T T T T
S S S
S
T T
S T T
T T T T S S S S
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence Q F N D H F W A T V D N Y R L P G T T V L Q N T T Q T A N S R S D K S W A G G T D I L G Q Y G V S G M E L H T V G K S L T A K K S W F M F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T S
T T S
T T
T T
S S
S
T T T
T T S
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence D E I V A L G S G I A S T D G I A T E T I V E N R K L N S S G N N A L I V N G T A K P G S L G W S E T M T G T N Y I H L A G S V P G S D I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S
S S
T T
S T T
S S T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence Y Y F P G G A A V K G L R E A R S G S W S S L N S S A S W K D S T L H T R N F M T L W F D H G M N P T N G S Y S Y V L L P N K T S S A V A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T
S T T T
S S
S S T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence Y A A T P Q I S I L E N S S S A Q A V K E T Q L N V T G I N F W N D E P T T V G L V T S N R K A S V M T K E T A S D F E I S V S D P T Q S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S T T T T
S S S
T T S S S
S S
T T S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence V G T I Y I D V N K S A T G L I S K D N E I T V I Q Y Y P T M K F K V N V N N S G G K S Y K V K F S L T G T P G S N P S P I P I P N P Y E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
S S S
T T
T T
S S S
S S G

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence E A L P I N A L T D T P V V Y N D A N A S G G K K L G F N N N A V D D Y V E F S L D V T Q P G T Y D V K S R I M K S T N S G I Y Q L S I N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G
S S
T T S G G G
S T T
S
S S
T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence T N V G S A Q D M F W T T S E L S K E F T M G S Y S F T S P G S Y L F R L K T T G K N V S S S G Y K L M L D N F S L V S T G I D T T V I V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
S S
T T S S S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence N A D A A G V T K V G T W T G T N T Q T D R Y G A D Y I H D G N T G K G T K S V T F T P N V P I S G T Y Q V Y M M W A A H T N R A T N V P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S S S
S S
S S S
T T
S T T T
B S S S
S S B
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040

Sequence D V T H S G G T A T L N V N Q Q G N G G V W N L L G T Y S F N A G S T G A I K I R T D A T N G Y V V A D A V K L V K V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S
S S
S B S
T T
S S B

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	R	A	D	E	F	D	T	L	R	E	K	Y	K	A	M	L	N	G	G	T	T	Y	N	L	S	D	P	D	I	A	A	R	V	N	A	I	T	V	T	A	Q	G	Y	W	D	S	M	L	K	D	P	N	R	N	R	L	W	N	D	A	P	F	G	S	D	S	T	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																		S				T	T	S																				T				S	T	T		S		S		T	T	S			S	S		T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	T	T	Y	R	H	L	Y	D	M	A	L	A	Y	T	T	Y	G	S	S	L	Q	G	N	A	A	L	K	A	D	I	I	S	G	L	D	W	M	N	A	N	Q	F	Y	N	G	C	S	Q	Y	Q	N	W	W	H	W	Q	I	G	G	P	M	A	L	N	D	I	V	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T		T	T	T	T																			T	S	S	T	T					S							T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	Y	T	E	L	T	A	T	Q	I	S	N	Y	M	A	A	I	Y	Y	T	Q	A	S	V	T	M	T	G	A	N	R	L	W	E	S	Q	V	I	A	I	S	G	I	L	N	K	D	S	A	R	V	A	A	G	R	D	G	I	S	A	L	L	P	Y	V	A	K	G	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S																		S																						T	T												T	G	G	G	S	S			S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	Y	N	D	G	S	F	V	Q	H	T	Y	Y	A	Y	N	G	G	Y	G	S	E	L	L	S	G	I	A	D	L	I	F	I	L	N	G	S	S	W	Q	V	T	D	P	N	K	N	N	V	Y	R	W	I	Y	D	S	Y	E	P	F	I	Y	K	G	N	L	M	D	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S					T	T	T				T	T	T																	T	T	S	T	T					T	T												T	G	G	G			T	T				G	G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	G	R	E	I	S	R	H	G	L	Q	D	D	K	A	A	V	T	V	M	A	S	I	I	R	L	S	Q	T	A	A	S	A	D	A	T	A	F	K	R	M	V	K	Y	W	L	L	L	D	T	D	K	T	F	L	K	A	V	S	I	D	L	I	I	A	A	N	Q	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	G	G	G	G	G		G	G	G																		T	T	S																				T	T		T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	N	D	S	T	V	T	S	R	G	E	L	V	K	Y	K	Q	F	S	G	M	D	R	A	V	Q	L	R	P	G	F	G	F	G	L	S	M	F	S	S	R	I	G	N	Y	E	S	I	N	A	E	N	N	K	G	W	H	T	G	D	G	M	T	Y	L	Y	N	T	D	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S													T	T	T	T							T	T										S	S	S		S					T	T		S	T	T		T	T	T	T	S	S						S	S		T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	Q	F	N	D	H	F	W	A	T	V	D	N	Y	R	L	P	G	T	T	V	L	Q	N	T	T	Q	T	A	N	S	R	S	D	K	S	W	A	G	G	T	D	I	L	G	Q	Y	G	V	S	G	M	E	L	H	T	V	G	K	S	L	T	A	K	K	S	W	F	M	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	T	T					S		T	T	S		T	T					T	T					S	S				S										T	T	T											T	T	S												S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	D	E	I	V	A	L	G	S	G	I	A	S	T	D	G	I	A	T	E	T	I	V	E	N	R	K	L	N	S	S	G	N	N	A	L	I	V	N	G	T	A	K	P	G	S	L	G	W	S	E	T	M	T	G	T	N	Y	I	H	L	A	G	S	V	P	G	S	D	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S													S	S	S													S	S								T	T						S	T	T																S	S	T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	Y	Y	F	P	G	G	A	A	V	K	G	L	R	E	A	R	S	G	S	W	S	S	L	N	S	S	A	S	W	K	D	S	T	L	H	T	R	N	F	M	T	L	W	F	D	H	G	M	N	P	T	N	G	S	Y	S	Y	V	L	L	P	N	K	T	S	S	A	V	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				G	G	G	T			S	T	T	T																			S	S		S	S										T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	Y	A	A	T	P	Q	I	S	I	L	E	N	S	S	S	A	Q	A	V	K	E	T	Q	L	N	V	T	G	I	N	F	W	N	D	E	P	T	T	V	G	L	V	T	S	N	R	K	A	S	V	M	T	K	E	T	A	S	D	F	E	I	S	V	S	D	P	T	Q	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		S							S	S	S							T	T	T	T								S	S	S					T	T				S	S	S									S	S									T	T	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	V	G	T	I	Y	I	D	V	N	K	S	A	T	G	L	I	S	K	D	N	E	I	T	V	I	Q	Y	Y	P	T	M	K	F	K	V	N	V	N	N	S	G	G	K	S	Y	K	V	K	F	S	L	T	G	T	P	G	S	N	P	S	P	I	P	I	P	N	P	Y	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S							S	S										T	T							S	S	S								T	T		T	T										S	S	S												S	S			G
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	E	A	L	P	I	N	A	L	T	D	T	P	V	V	Y	N	D	A	N	A	S	G	G	K	K	L	G	F	N	N	N	A	V	D	D	Y	V	E	F	S	L	D	V	T	Q	P	G	T	Y	D	V	K	S	R	I	M	K	S	T	N	S	G	I	Y	Q	L	S	I	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G							S	S								T	T	S	G	G	G									S	T	T											S														S	S									T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	T	N	V	G	S	A	Q	D	M	F	W	T	T	S	E	L	S	K	E	F	T	M	G	S	Y	S	F	T	S	P	G	S	Y	L	F	R	L	K	T	T	G	K	N	V	S	S	S	G	Y	K	L	M	L	D	N	F	S	L	V	S	T	G	I	D	T	T	V	I	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S									S	S		S													S	S														T	T	S	S	S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	N	A	D	A	A	G	V	T	K	V	G	T	W	T	G	T	N	T	Q	T	D	R	Y	G	A	D	Y	I	H	D	G	N	T	G	K	G	T	K	S	V	T	F	T	P	N	V	P	I	S	G	T	Y	Q	V	Y	M	M	W	A	A	H	T	N	R	A	T	N	V	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		S	S	S					S							S	S				S	S	S						T	T		S	T	T	T									B	S	S	S													S	S	B		S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040
Sequence	D	V	T	H	S	G	G	T	A	T	L	N	V	N	Q	Q	G	N	G	G	V	W	N	L	L	G	T	Y	S	F	N	A	G	S	T	G	A	I	K	I	R	T	D	A	T	N	G	Y	V	V	A	D	A	V	K	L	V	K	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T										S	S	S		S	S											S	B	S									T	T		S	S	B