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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6erqA_

Fold library idPDB HeaderMoleculeTitle
c6erqA_4.50PDB header: transcriptionChain: A: PDB Molecule: dna-directed rna polymerase, mitochondrial;


Added to library: Sat Nov 18 08:40:40 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence WAKILEKDKRTQQMRMQRLKAKLQMQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD
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Known secondary structure (DSSP)




T
STT

 .........80.........90.........100.........110.........120.........130.........140
Sequence MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA
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Known secondary structure (DSSP) T
T




T

TT

 .........150.........160.........170.........180.........190.........200.........210
Sequence LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK
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Known secondary structure (DSSP) S



TT













TTT
S
S






SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLC
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Known secondary structure (DSSP)


S




TT


ST
 .........290.........300.........310.........320.........330.........340.........350
Sequence LLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAE
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Known secondary structure (DSSP) SS


TT
TT
TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence VPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQATQMPCSLDRSSRLVPVLYHVYSFRNV
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Known secondary structure (DSSP)
SS















TT





S
SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence QQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLE
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Known secondary structure (DSSP) S

T
SGGGS
BSS

TTSSSS


SB


TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence TCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPELAHCQKVAREMHSLR
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Known secondary structure (DSSP) S
GGGGT


SS
BGGGTB


GGG


 .........570.........580.........590.........600.........610.........620.........630
Sequence AEALYRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLV
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Known secondary structure (DSSP) TTTS
BB


TT

S
SSSSTTS
SS


SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence NLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH
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Known secondary structure (DSSP) TTTSSS
T
TTTS

GGGGSSSTSS
GGG

 .........710.........720.........730.........740.........750.........760.........770
Sequence LPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRVAQVLEGFIT
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Known secondary structure (DSSP)


TTTT
TT
S

SS


T
TTTT

 .........780.........790.........800.........810.........820.........830.........840
Sequence RKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTE
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Known secondary structure (DSSP)
SSSTT
TTS
GGGT
 .........850.........860.........870.........880.........890.........900.........910
Sequence SARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDS
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Known secondary structure (DSSP) TT



TTS
















S



 .........920.........930.........940.........950.........960.........970.........980
Sequence SHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKIL
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Known secondary structure (DSSP) TT


TT
GGGS
S

SS
S
 .........990.........1000.........1010.
Sequence EASQLKETLQAVPKPGAFDLEQVKRSTYFFS
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Known secondary structure (DSSP) T





S

GGGGGG
TTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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