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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6epzA_

Fold library idPDB HeaderMoleculeTitle
c6epzA_1.80PDB header: transport proteinChain: A: PDB Molecule: periplasmic alpha-galactoside-binding protein;


Added to library: Sat Apr 14 08:54:49 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AFETTTPPEPPQFPAEGKINYVARDTILEFKALPSYSEPDWITEKFEKAGKLPPLKERLPEEPLVYKTGN
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Known secondary structure (DSSP)



B










S





GGGS


S

B

TTTTTSS

S
SS

GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence MPDGVGVYGDTMRHVVGGRPEGWNYIAGQSQGWGGIDIALSECLTRTAPLFQVDAKDTEPLPNLAKSWEW
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Known secondary structure (DSSP)
TT
S




S




S
GGGT



STT


S
GGGGG

STT


SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence SEDGHTLTMHLVKGAKWSDGEAFNADDVMFYWEDAVVDPNVSPLGGGASPEAFGEGTTLKKIDDYTVEWT
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Known secondary structure (DSSP)
TTSS
SS
B
TTS
B
STTT
TT


TTS


GGGG
TT
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FKAAFPKQYLYTMAYPSFCPGPSHILKPQHPKYSKNTYNQFKNAFPPEYMNMPVMGAWVPVSYRPDDLIV
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Known secondary structure (DSSP)
SSS

TTTSTTT




GGGSTTSSS

SS
TT





SSSTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LRRNPYYWKVDEKGQQLPYLNEVHYKLSTWADRDVQAVAGSGDFSNLEQPENFVASLKRAADPNAPARLA
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Known secondary structure (DSSP)
TT

TT
BBS
SSS

TSS


GGGTSTT
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence FGPRLIGYNLQMNFSANGWGNPDERGQAIRELNRNEVFRQAVTSALDRKAIGDSLVKGPFTAIYPGGISS
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Known secondary structure (DSSP)
SS




S
TT


T
T



SSS
B


SSS
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence GTSFYDRASTVYYPFNLEGAKAALASIGLKDTDGDGFLNFPKETLGGRNVEITLLVNNGYATDKSLAEGL
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Known secondary structure (DSSP) TSTT

GGG

B



TT
B

SSSSS
B

TTSGGG
B
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VGQMAKLGLRVVIHSLDSNQRDAAHYGGQFDWLVRRNSTELSSVVQNTEQLAPVGPRTSWNHRSPEGKEL
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Known secondary structure (DSSP) T

TT

S

SSTTGGGGTTSSTT
SSS



TT


 .........570.........580.........590.........600.........610.........620.........630
Sequence DLMPFEKEMADIVRKFISSQDNAERADLMKQYQKVYTQNLYTIGLTEYPGALIVNKRFSNVPQGTPIFMF
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Known secondary structure (DSSP)


T


TSS

TT
B


TT

SBSS
 .........640.........650.........660.........670..
Sequence NWAEDAIIRERLWVAADKQGKYELFPQQLPGKPGEGGPINHH
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Known secondary structure (DSSP) SBTTGGG
B

GGG




SSTT
B


TTSSS
B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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