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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6eojD_

Fold library idPDB HeaderMoleculeTitle
c6eojD_3.55PDB header: rna binding proteinChain: D: PDB Molecule: polyadenylation factor subunit 2,polyadenylation factor


Added to library: Sat Nov 18 09:48:36 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VTQRRSVDVSSPYINLYYNRRHGLPNLVVEPETSYTIDIMPPNAYRGRDRVINLPSKFTHLSSNKVKHVI
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Known secondary structure (DSSP)







TTTTT






SSGGGGGG


GGG

STTGGGSS

SS



 .........80.........90.........100.........110.........120.........130.........140
Sequence PAIQWTPEGRRLVVATYSGEFSLWNASSFTFETLMQAHDSAVTTMKYSHDSDWMISGDADGMIKIWQPNF
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Known secondary structure (DSSP)


TTSS
SSS
TTTS






SS





TTSS



SSS

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SMVKEIDAAHTESIRDMAFSSNDSKFVTCSDDNILKIWNFSNGKQERVLSGHHWDVKSCDWHPEMGLIAS
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Known secondary structure (DSSP)
S
S
SS

SS
SSSS
TTTT


SS



SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence ASKDNLVKLWDPRSGNCISSILKFKHTVLKTRFQPTKGNLLMAISKDKSCRVFDIRYSMKELMCVRDETD
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Known secondary structure (DSSP)
TTS

SSSSS


SS

TTT

SSSTTTTT
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence YMTLEWHPINESMFTLACYDGSLKHFDLLQNLNEPILTIPYAHDKCITSLSYNPVGHIFATAAKDRTIRF
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Known secondary structure (DSSP)
SSSTTTTTTTBSSS
STTSSSS

TTSSTTS
 .........360.........370.........380........
Sequence WTRARPIDPNAYPTYNNKKINGWFFGINNDINAXXXXX
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Known secondary structure (DSSP)

S

TT





SS
TTS


SS
S









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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