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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6el1L_

Fold library idPDB HeaderMoleculeTitle
c6el1L_6.10PDB header: membrane proteinChain: L: PDB Molecule: yaxb;


Added to library: Sat May 19 08:36:42 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LSYPDINFKIFSQGVKNISHLAQFKTTGVEVLQEKALRVSLYSQRLDVIVRESLSSLQVKLENTLALTYF
Predicted secondary structure


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Known secondary structure (DSSP)






STT


SS

TTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TTLEEIDEALISQDIDEESKSEMRKERINIIKNLSNDITQLKQLFIEKTELLDKSSSDLHNVVIIEGTDK
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Known secondary structure (DSSP) S


TTTTTS


 .........150.........160.........170.........180.........190.........200.........210
Sequence VLQAEQLRQKQLTEDIATKELERKEIEKKRDKIIEALDVIREHNLVDAFKDLIPTGENLSELDLAKPEIE
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Known secondary structure (DSSP)



SSTTTTTT

S


SSS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LLKQSLEITKKLLGQFSEGLKYIDLTDARKKLDNQIDTASTRLTELNRQLEQSEKLIAGVNAVIKIDQEK
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Known secondary structure (DSSP)
 .........290.........300.........310.........320.........330..
Sequence SAVVVEAEKLSRAWHIFIHEITALQGTSLNEVELSKPLIKQQIYLESLIKQL
Predicted secondary structure

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Known secondary structure (DSSP) T



SS
STTTT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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