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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6edoA_

Fold library idPDB HeaderMoleculeTitle
c6edoA_4.00PDB header: motor proteinChain: A: PDB Molecule: midasin;


Added to library: Sat Oct 20 09:13:04 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DVLIEWVAIYPQIYDILEHINYVPSNTLQRLRLHQPWSKIDYDVWFLYASDEIRETCKVKYYGETKTYGE
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Known secondary structure (DSSP)
GGGGGTTTS
TS



TT

SS



S
T
SSTTGGGS

S
TTSS


ST
 .........80.........90.........100.........110.........120.........130.........140
Sequence VFVLENERISQLHRLFVSERAEHLKNLLFDALPLVELGGNVFFNSHVPLPCSLVLTKSTQENLNRITPYL
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Known secondary structure (DSSP) TTTTT

TT





B
SSS
B

TT








SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VQKRPILLAGPEGIGKKFLITQIAAKLGQQIIRIHLSDSTDPKMLIGTYTWQPGVLTQAVITGWILFTNI
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Known secondary structure (DSSP) T

B




TTS
TT





TT

STTTT







S

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence EHEVLSVLLPLLEKRQLVIPSRGETIYAKGSFQMFATSSMKTKILGQRLWQILDLTYQPDECVEVVSTLY
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Known secondary structure (DSSP)


TTTTTSS



TTTT





S



SS

STSB






GGG
G
 .........290.........300.........310.........320.........330.........340.........350
Sequence PVLSIICPTLYSVYKDIFDLFSSKIYRRLCLRDFYKFIKRVAFLYHKVFKEAIDMFGAFIPSRDGFDLVV
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Known secondary structure (DSSP) GG
ST








TT

TTT


SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence RNVAIELNIPPEKALQLPVFQNLEHNINIGRCSLKKLSTIRNSYAFTSSSLGLLEQLAAGVQTNEPLLLV
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Known secondary structure (DSSP) SSS

TTGGG





SSS



SS





S








T

B


 .........430.........440.........450.........460.........470.........480.........490
Sequence GETGTGKTTTIQLLAGLLGQKVTVINMSQQTESSDMLGSTLGLPLHERFIDIFEQTFSSKKNAKFISMAS
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Known secondary structure (DSSP)
SSS
T




BTTSS
S



SSS
TTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence TSARRFRWKTCLKIWKEACKLSKTVLNQVELRNQWAKFEKEVEDFEKVLTVEGALVKAVRSGHWVLLDEI
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Known secondary structure (DSSP) TTTT
TTTT







T


B
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence NLASLETLEPIGQLLSPHKNFRLFGCMNPEPSFRSRFTEIYVHSPDQNLDDLLSIIQKYIGSNEHVIREV
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Known secondary structure (DSSP) TS

S
T


SS


B
B




SSTTSS






TT
SSS


 .........640.........650.........660.........670.........680.........690.........700
Sequence AELYQVAKSLSLDPHYTVRTLSRTLSYVTEIAPIYGLRRSLYEGFCMSFLTLLDHTSESLLYNHVVRFTL
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Known secondary structure (DSSP) GGG



S
TTTTTTT

TTSSS
S
T
 .........710.........720.........730.........740.........750.........760.........770
Sequence NRDQQNAILKQIPKVPDYIAFCHYWLRRGPVEEQEHYIITPFVQKNLLNIARACSTRMPILIQGPTSSGK
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Known secondary structure (DSSP)
T

TTTS





SSS











S



TT


S
STT
 .........780.........790.........800.........810.........820.........830.........840
Sequence TSMIEYVAKKTGHKFVRINNHEHTDLQEYIGTYVTDDNGSLSFREGVLVEALRNGYWIVLDELNLAPTDV
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Known secondary structure (DSSP) TSSS




SS

T





SSS

SS


SS


TGGG

SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence LEALNRLLDDNRELFIPQVLVKPHPEFMLFATQNPGRKHLSRAFRNRFLEIHFDDIPENELETILHKRCK
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Known secondary structure (DSSP) TTTSSS











SS







S


TTGGGSS






S
 .........920.........930.........940.........950.........960.........970.........980
Sequence IAPSYAAKIVQVFRELSLRRNSFATLRDLFRWAFREAVGYQQLAENGYMLLAERARDQKDKLAVQEVIEK
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Known secondary structure (DSSP)

TT








SSTSS
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VMSKVVWTRPMIRLFCLVWRCLLAKEPVLLVGDTGCGKTTVCQILAECLHKELHIINAHTENGDIIGAQR
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Known secondary structure (DSSP)






T




BS
TTSSTT





TT


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PVRNRSAVNYSLHSQLCEKFNVIDDLIEKFEKLNLIERQIIKHDGALVTAMKQDFFLLDEISLADDSVLE
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Known secondary structure (DSSP)



TTTSSS




T





SGGGS
S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RLNSVLELSRTLTLAVSLTAKDGFAFFATMNPGGKKELSPALRNRFTEIWVPTEDILKIVEGKLHNNKIE
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Known secondary structure (DSSP) SS


B



B



SS
B













TS


B


S
SS

T
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LARPLVEYAKWHANEYLYTDVISIRDVLSAVEFINACEILDLNLVLFNAVSMVFIDALLASLHAERQRCF
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Known secondary structure (DSSP) TSS





T

SS
TTTTT

T
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence AKLNELAHTDTTLMNASKVLRALQVLKPILLEGSPGVGKTSLITALARETGHQLVRINLSDQTDLMDLFG
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Known secondary structure (DSSP)


STSSS



TT

TTTTTTSTT



SS

T
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SDVPVEAPFLAAMRNGHWVLLDELNLASQSVLEGLNACLDHRNEAYIPELDKVFHPNFRVFAAQNPQGLP
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Known secondary structure (DSSP)






S


GGGS
TTT
SS



SSSSS



TT









 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RSFINRFSVVYVEALKEKDMIEIAACNYHQVNEDWRLKIIKFMFRLQDNIEKDISGSPWEFNLRDTLRWL
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Known secondary structure (DSSP) TTTTTTS





TTTTTSS
TTS








 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence QLLNDAADYLEVMVLHRMRTVEDRVRTCELFKEVFDIDYEPRTIGFSLSSQCFKVGHSLLVRDQKTLLDS
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Known secondary structure (DSSP) TT


TTSS


S
S









SS

SS












 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence QNILQSQLPVLESVITCINKKWPCILVGDTATGKTCILRLLAAIAGAKIKEMAVNSDTDTMDLIDISRKA
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Known secondary structure (DSSP)



GGGTT


S
TTSSST

TTS




 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence SELFTDLSQQLLNIVIKYRNFDIFRETSLYTLTTSQAFTLLQKVVDQLDETLVHSLGDIHEKARKLLAEF
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Known secondary structure (DSSP) STT


TT


TT

GGGT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence SASPAGGYLLKAVEEGHWFVLDNANLCSPAVLDRLNSLLELIVNEKTTEDGHPKTIKPHPNFRLFLTVNP
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Known secondary structure (DSSP) TS





TTSS
TTTSS






SSS
SS







TT



S
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence VYGELSRAMRNRGVEIFLLKEALTEIDKKQMSLLEPAPISSAVDTLASNISYIKYVFETMGXXXXXXXXX
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Known secondary structure (DSSP) SS



TTS







TTTSSS

SS

SSTTS



 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) S



SSSSTT

S

SS
STTTTT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TTS
S


TTT







SS


 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)

T




TTT



TT

TT
 .
Sequence X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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