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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6dtfA_

Fold library idPDB HeaderMoleculeTitle
c6dtfA_1.75PDB header: peptide binding proteinChain: A: PDB Molecule: periplasmic oligopeptide-binding protein;


Added to library: Sat Dec 1 09:09:30 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TQLDEKQHIVINNGAEPQSFDPHKTEGVPESNVAYQLLEGLVTSDSEGKLQPGAAESWENTPDFKTWTFH
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Known secondary structure (DSSP)

B
SS


S

S
S
TTS

S


S
TTS
SS
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LRKDAKWSNGDPVTAHDFVFAWRRLVDPATAAPYASYLSYLQVENAQDIIDGKKKPAELGVEAKDDYTFV
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Known secondary structure (DSSP)
TT
B
TTS
B


GGG

TTTTTTBTTTTSS
GGGSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VHATNPVPYAVSLTTHQSLLPLPQKVVEKLGDAWVKKENYVGNGAYKLANHIINEKIEFERNPLYWNDKE
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Known secondary structure (DSSP) BSS

TTTTSGGG



GGGGGSTTT



SSTTT
TTSTTGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence TVINSATFLAIENPSTDVARYRAGDLDMTSYGLPPEQFAKLKKELLGEVYVTRTLGTYSYELNNKKAPFD
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Known secondary structure (DSSP)







TTS
SB

S


TTTTTTT
TTSTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NVNIRKALNLSLDRNVITDKVLGQGQTPTYVFTPTYIEEGHLIQQPAYSKEPMAQRNEEAIKLLEEAGYS
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Known secondary structure (DSSP)


TTT
SS

SSSS
TTSTT
TT



GGGGS
TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence KANPLKFSILYNTNENHKKVAIAAASMWKANTKGLIDVKLENQEWKTYIDSRRAGRYDVARAGWHADYNQ
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Known secondary structure (DSSP) SSS
S
TTTS
T

S
SSSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence ATTFGNYFLSNSSNNTAKYANPEYDKAMAESYAATDAEGRAKAYAKAEEILGKDYGIVPIFNYVNPRLVK
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Known secondary structure (DSSP) TGGGSTT
TT
TT



TT

STT
B
 .........500.........510....
Sequence PYVKGYSGKDPQDHIYLRNLYIIK
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Known secondary structure (DSSP) TTS

S

TT



GGG
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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