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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6drdA_

Fold library idPDB HeaderMoleculeTitle
c6drdA_3.90PDB header: transferaseChain: A: PDB Molecule: dna-directed rna polymerase ii subunit rpb1;


Added to library: Sat Jun 15 09:00:32 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRRIDLRFHPKPSD
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Known secondary structure (DSSP)
B

SSS
SS


TTTTTT



TTGGGTTTSSSS


TTSS

GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence LHLQTGYKVERHMCDGDIVIFMGHRVRILPWSTFRLNLEMNLHLPQSLETRAEIQELAMVPRMIVQDTLT
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Known secondary structure (DSSP)



TT



SS


B

B




SSS


B

B


STTTTTT
BTTT


 .........150.........160.........170.........180.........190.........200.........210
Sequence AVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDE
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Known secondary structure (DSSP) TSSS

STTTTT
SS

S




S

SSS

S
SS



TT

GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence DSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIE
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Known secondary structure (DSSP) GSSSSSSS
TTT
STT



STTTSSSTT
TTSSS
STTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTG
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Known secondary structure (DSSP)




GGGG


TTTTT




TTS
TTTTTTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFV
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Known secondary structure (DSSP) S
TT
TTGGGTTT
SS

TTSST

B


BTTBS



SSS
SSTTS
SS

SSSTTS
B
 .........430.........440.........450.........460.........470.........480.........490
Sequence ENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGE
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Known secondary structure (DSSP)


TTT


TTTTSSTSS

TTS

SS

SSGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence DGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDR
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Known secondary structure (DSSP) T
B
TTS

SSSSS
S


SSSSSS
TTSTT
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence EVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQA
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Known secondary structure (DSSP)
TT


SS
TTTTTTT

TTS




TS

SS

SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence QENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQNV
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Known secondary structure (DSSP) TTTSTS
TTT







B

TT

TTTSSTTT


 .........710.........720.........730.........740.........750.........760.........770
Sequence TLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVA
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Known secondary structure (DSSP)

STTTTTT
SS
SS


B
SGGGG
TTTTTTTS
B
STTT




SSGGG
S
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence EDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL
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Known secondary structure (DSSP) STTT
S

S
B
S


STTT


SSS

SSSS

 .........850.........860.........870.........880.........890.........900.........910
Sequence RIRIMNKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGV
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Known secondary structure (DSSP)
B



TTS


BS
TT





B


STTSS


TTS





B
SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence SLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL
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Known secondary structure (DSSP)
STTB
TTT
S
TTS
STTTTTTTTTTTGGGT



GGGTTTTTTSSS
 .........990.........1000
Sequence MAITGCFDLLLDAEKCKYGM
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Known secondary structure (DSSP)











S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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