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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6dnsA_

Fold library idPDB HeaderMoleculeTitle
c6dnsA_2.24PDB header: hydrolaseChain: A: PDB Molecule: alpha-1,4-endofucoidanase;


Added to library: Sat Oct 6 08:42:57 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PDPNQGLRAEWMRGALGMLWLPERTFNGNIEGIRIDDFLTQIKDIRTVDYVQLPLTSPNIFSPTHVAPHP
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Known secondary structure (DSSP)

TTTTGGGGGGTT



B

TTTTSTT

STTT

S

SB
SGGGTT
BSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence IIESLWQGDTDANGDPINLVAPRESVDDPLLSWLKALRAAGLRTEIYVNSYNLLARIPEDTQADYPDVSA
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Known secondary structure (DSSP) TTTT
B
SSS
BSS

S

TTT

TT
TTTTS
SSTTS

TTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RWMEWCDTNTEAQAFINSQTYHEGNGRRKYMFCYAEFILKEYAQRYGDLIDAWCFDSADNVMEDECGDDP
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Known secondary structure (DSSP)
-

T
GGGS
STTTGGG

TTTTTT


T
 .........220.........230.........240.........250.........260.........270.........280
Sequence ASEDVNDQRIYQAFADACHAGNPNAAIAFNNSVGDREGNPFTSATLFDDYTFGHPFGGAGNMVVPEALYT
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Known secondary structure (DSSP) T


GGG

TT



B

SSS

B



TT
SB




SS
SS
TT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence YNHDLVVFMQTNNGYAFRDDTRTWNDNVVAHFFPKQSTTSWNAGNTPCLTDEQFVEWTSTGIVNGGGITW
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Known secondary structure (DSSP) TTTBS
SSSS
STTTT
B


BSBSS
SSB
SSBSS
TTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence GTPLVRTNLENAPVLTLQPYALNQFELTDTYLKEFQSPGKPNWSRQYTILPAIYPGQPYSHNLVEGVDFW
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Known secondary structure (DSSP) B


BTTS


TS
SS
SSS





B
TTS
BTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence DPEGVGITGLTASGTLPAWLTISQTATGTWTLSGTPPVSEASNYTFELMAQDSDGVTNREVKLEVISHPA
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Known secondary structure (DSSP)
TTSS


S

SS
TT


TT




SS

B



S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GFTNPGDGTPVWFSNPMVLAKATALDYGSLLKLGVDFYDFEGDVLTITKTSGPDWLVLTQNSDDTWRLSG
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Known secondary structure (DSSP) S



SSS

S
SS









BTTT
TT



S
TT
TT
 .........570.........580.........590
Sequence MPTAADAGENSFTFNVSDILSSDTEIKITV
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Known secondary structure (DSSP)


GGG
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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