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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6dmoA_

Fold library idPDB HeaderMoleculeTitle
c6dmoA_4.10PDB header: protein bindingChain: A: PDB Molecule: protein patched homolog 1;


Added to library: Sat Jul 14 08:43:51 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNY
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Known secondary structure (DSSP)

T

S


B



SSTTS
SSTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVHVYMYNRQWKLEHLCYKSYMDQII
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Known secondary structure (DSSP) T

S
S
SSSS




S


SSS
STTSB



 .........150.........160.........170.........180.........190.........200.........210
Sequence EYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMQNKAEVGHG
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B
GGGGSTS





SSSSS

GGG

TT



TT
TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence YMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHAL
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Known secondary structure (DSSP) TSSS

SSSS
SS

TT
TTTT

S


SSSTTSS

B
SSTTTSB

BSS
SSSS



 .........290.........300.........310.........320.........330.........340.........350
Sequence QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTTLDDI
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Known secondary structure (DSSP)



S
TTTSSS

SSS
SSSS
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence LKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATF
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Known secondary structure (DSSP) TTSSTTT

SSSSS

SS

B
SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence QVLLFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPAL
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Known secondary structure (DSSP)
S
SSSTTTSSTTTTS

 .........500.........510.........520.........530.........540.........550.........560
Sequence RAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGV
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Known secondary structure (DSSP) SS


T

SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence SLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHRSFSNVKYVM
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Known secondary structure (DSSP) S





TTTTS
SSS


S


TT
SS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence LEENKQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLT
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Known secondary structure (DSSP)

SSS




TTS


SSTTTTT

TTTS

SSSS
S

TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence KQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQ
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Known secondary structure (DSSP)

SS
SSS
S

S


S



SS







SS


SS
S










 .........780.........790.........800.........810.........820.........830.........840
Sequence FPFYLNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFISVVLACTFLVC
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Known secondary structure (DSSP)



STTT
STTSSTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence AVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNR
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Known secondary structure (DSSP) SS

TTTT


SSST

SSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence RAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPE
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Known secondary structure (DSSP) GGG
S
S
S





 ..
Sequence VS
Predicted secondary structure

SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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