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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6djyD_

Fold library idPDB HeaderMoleculeTitle
c6djyD_3.90PDB header: virusChain: D: PDB Molecule: turret protein;


Added to library: Sat Jun 8 08:14:33 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MIDLRLEEDILTATLPEFLSTRPKYRYAYTNTKQQDIRFQGPMRHVRLTHLYKQTKLWNLQYIERELAIS
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Known secondary structure (DSSP)









BGGGGGGGG
SS




TT




SS
SS



S
STTSTT

S


 .........80.........90.........100.........110.........120.........130.........140
Sequence EIDDALDEFIQTFSLPYVIEQGTYKYNMLLGMHAHNVNYQDDVSELIANNPQLLNYLDDNPFSAIFELVN
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Known secondary structure (DSSP) TT







SS

B

SSTTS
ST
TTTT
B
SS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VDLQIYQYGQNIFNNEAEHTILFLKDNTNYGVIQALQKHPFSATHINWHLHKHIFVFHSREQLLNKLLSA
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Known secondary structure (DSSP) S


SSTT

S
S
SS
SSSSSB
SSGGGGG

SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GLEDSQLYQRQKTYSTKRGDRPTERMVTYIEDDHIRRIQAVFPLLLDNIFDVKLHKDSSMTWLKSYADMI
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Known secondary structure (DSSP) TT


S


S



B




GGG

SS


TTTS

TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence YDSVKNSNSTITPEIRKLYLRMYNQYMRIFLPIEQYMLYDNTCWPFSEKITLKINVRLISSRENQPVLWK
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Known secondary structure (DSSP) TSSSSS
TTTSS
TTGGGT

SSS
S












SSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence TPIDTENLISIVQPDEPINKLNFTAIPSTMIRLNDNITMYRAVKDMFSAIEYLPDAIENIPTLTMKEQAL
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Known secondary structure (DSSP)

S

S

S
TT
S







SSSS

B





SSGGGGT



BS




 .........430.........440.........450.........460.........470.........480.........490
Sequence SRYISPDSEAQNFFNNQPPYLNSIMNVNRQVFEAVKRGNIQVSTGSMEHLCLCMHVKSGLIVGRTVLIDD
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Known secondary structure (DSSP) TS


TTSS
STS




SSSTTSS

S

SSS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence KVVLRRNFNASTAKMITCYVKAFAQLYGEGSLINPGLRMVFFGVETEPAIDILKLFYGDKSLYIQGFGDR
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Known secondary structure (DSSP)








SS

S
S

SS



S

SSS







 .........570.........580.........590.........600.........610.........620.........630
Sequence GIGRDKFRTKIEDALTLRIGCDILISDIDQADYEDPNEEKFDDITDFVCYVTELVISNATVGLVKISMPT
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Known secondary structure (DSSP)

TT






TTGGG
TT

S








SS

SSS
B

SS

 .........640.........650.........660.........670.........680.........690.........700
Sequence YYIMNKISSTLNNKFSNVAINIVKLSTQKPYTYEAYIMLSHGSTLTNKGYLRNPVCDVYLEKISLQPMDL
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Known secondary structure (DSSP) TTTS
S
SSS
TT


SS


S

B
S

TTS









 .........710.........720.........730.........740.........750.........760.........770
Sequence KIISTISNEINYDKPTLYRFVVDKNDVTDVSIAMHILSIHCSTITTRSVMVRSDNTGAFVTMSGIKDMKR
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Known secondary structure (DSSP)




SB







SSSSSTT
S

B


SSSSSS



 .........780.........790.........800.........810.........820.........830.........840
Sequence VAIMNRMTDGTSANSYMHEQNGKLYLQKVPYLEDLISAFPNGFGSTYQNDYDSSMSVINVNALIRQVVYR
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Known secondary structure (DSSP) TT


SSSS
SS



SSS
B



SSSGGGSSS
S



S



BSS



 .........850.........860.........870.........880.........890.........900.........910
Sequence VISKSIPVALLESLSRIRIIGGRDLGEMNAVYKLYKTPIEVYDAVGITREYPHVQISYRAQRYSFTESIP
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Known secondary structure (DSSP) TTT
S
TT
SS

SS
SS
GGGGG


TTS

SSS

TTTTS

TT
S


 .........920.........930.........940.........950.........960.........970.........980
Sequence NHTLLLANYVIMNDVDGAPISSLEQINTIKKIISKISLGSIAYIQVYTDIVARNINVMTKNDSFLISANA
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Known secondary structure (DSSP) SS
SS
TTS
SSSS


TT

SS


TTGGG

B



SSB

ST
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DKTVFKVQVSGYKAVEMCNYEQLLQLVSDNTGVNIIKLTYQDVLESCVLSSGILGDTGSWLLDLVLASTY
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Known secondary structure (DSSP) TSS
BSSS




SS


SS



SS
SSS
 ......
Sequence IIEIRG
Predicted secondary structure

SS confidence





Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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