Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6djyC_

Fold library idPDB HeaderMoleculeTitle
c6djyC_3.90PDB header: virusChain: C: PDB Molecule: major capsid protein;


Added to library: Sat Jun 8 08:17:44 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ANLANVLIFHDVFTTEDKPSAFIEYHSDEMIVNMPKQTYNPIDNLAKILYLPSLEKFKYGTGIVQLNYSP
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)


S





SS


S

S





S



TTTTTT
S

T
 .........80.........90.........100.........110.........120.........130.........140
Sequence HISKLYQNTNNIINTITDGITYANRTEFFIRVMVLMMMDRKILTMEFYDVDTSAISNTAILPTIPTTTGV
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTGGG

SS

SS

SSSS

TS






STT
S
SS

SSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence SPLLRIDTRTEPIWYNDAIKTLITNLTIQYGKIKTVLDANAVKRYSVVGYPIDQYRAYLYNHNLLEYLGK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
GGGGTT
SSS
TTS






TT








SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KVKREDIMSLIKALSYEFDLITISDLEYQNIPKWFSDNDLSRFIFSICMFPDIVRQFHALNIDYFSQANV
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)
S
TS
SS

SS







TT
TTGGG

 .........290.........300.........310.........320.........330.........340.........350
Sequence FTVKSENAIVKMLNSNQNMEPTIINWFLFRICAIDKTVIDDYFSLEMTPIIMRPKLYDFDMKRGEPVSLL
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)

SS
T

S
TTTTTT




S


S








SSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence YILELILFSIMFPNVTQHMLGQIQARILYISMYAFRQEYLKFITKFGFYYKIVNGRKEYIQVTNQNERMT
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
TT
TT
S
SSSS


SSS




 .........430.........440.........450.........460.........470.........480.........490
Sequence ENNDVLTGNLYPSLFTDDPTLSAIAPTLAKIARLMKPTTSLTPDDRAIAAKFPRFKDSAHLNPYSSLNIG
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) SS


SSSS
B
SS



T
TTTTTT






B
TTT
S

TT
B


SS

S
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence GRTQHSVTYTRMYDAIEEMFNLILRAFASSFAQRPRAGVTQLKSLLTQLADPLCLALDGHVYHLYNVMAN
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) S




TT
TT

SSSTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence MMQNFIPNTDGQFHSFRACSYAVKDGGNIYRVVQNGDELNESLLIDTAIVWGLLGNTDSSYGNAIGATGT
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) SSS

S
S

S
TTS




TTSS



SSS



TSS
TTSSS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence ANVPTKVQPVIPTPDNFITPTIHLKTSIDAICSVEGILLLILSRQTTIPGYEDELNKLRTGISQPKVTER
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) S











STTTS
SS


SS

STSTTT
TTS

 .........710.........720.........730.........740.........750.........760.........770
Sequence QYRRARESIKNMLGSGDYNVAPLHFLLHTEHRSTKLSKPLIRRVLDNVVQPYVANLDPAEFENTPQLIEN
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TT

SS





TT




S
TT



SSSS
SS
SS



S
 .........780.........790.........800.........810.........820.........830.........840
Sequence SNMTRLQIALKMLTGDMDDIVKGLILHKRACAKFDVYETLTIPTDVKTIVLTMQHISTQTQNNMVYYVFL
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TSTT





S

SS





SSS


TTSTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence IDGVKILAEDIKNVNFQIDITGIWPEYVITLLLRAINNGFNTYVSMPNILYKPTITADVRQFMNTTKAET
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) TTSS
B
TT




SSSS


STT
S

GGG





TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence LLISNKSIVHEIMFFDNALQPKMSSDTLALSEAVYRTIWNSSIITQRISARGLMNLEDARPPEAKISHQS
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) TTSS
SS



TT




TTS


S



SS


SS



TTSS

TT
B


GG
 .........990.........1000.........1010.........1020.........1030.........1040.
Sequence ELDMGKIDETSGEPIYTSGLQKMQSSKVSMANVVLSAGSDVIRQAAIKYNVVRTQEIILFE
Predicted secondary structure




































SS confidence




























































Known secondary structure (DSSP) GG



TTTB
TTS
BTTTS



S



S
S



S
SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D