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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6djyB_

Fold library idPDB HeaderMoleculeTitle
c6djyB_3.90PDB header: virusChain: B: PDB Molecule: major capsid protein;


Added to library: Sat Jun 8 08:17:22 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GGSSITYTSDTTGNPRITNARTNNDETHATGPIEDLNSTSHGREPEIESFADRAELAMMIQGMTVGALTV
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Known secondary structure (DSSP)




S
SS




S


S





STT



















SS




SS


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence QPMRSIRSTFANLANVLIFHDVFTTEDKPSAFIEYHSDEMIVNMPKQTYNPIDNLAKILYLPSLEKFKYG
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Known secondary structure (DSSP) S










S


SS


SS
SS







SSSST
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TGIVQLNYSPHISKLYQNTNNIINTITDGITYANRTEFFIRVMVLMMMDRKILTMEFYDVDTSAISNTAI
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Known secondary structure (DSSP)
TT


S
SSS



SS

SS




B



S
S
S
TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LPTIPTTTGVSPLLRIDTRTEPIWYNDAIKTLITNLTIQYGKIKTVLDANAVKRYSVVGYPIDQYRAYLY
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Known secondary structure (DSSP)
S

BSS



TTS

S
TTS



S

B
SSS

B



B
 .........290.........300.........310.........320.........330.........340.........350
Sequence NHNLLEYLGKKVKREDIMSLIKALSYEFDLITISDLEYQNIPKWFSDNDLSRFIFSICMFPDIVRQFHAL
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Known secondary structure (DSSP) T


TS
SS


SS





SSSTT
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence NIDYFSQANVFTVKSENAIVKMLNSNQNMEPTIINWFLFRICAIDKTVIDDYFSLEMTPIIMRPKLYDFD
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Known secondary structure (DSSP) TT


SS
TTTTT

S
TT




TTTTGGGTS


S


B



 .........430.........440.........450.........460.........470.........480.........490
Sequence MKRGEPVSLLYILELILFSIMFPNVTQHMLGQIQARILYISMYAFRQEYLKFITKFGFYYKIVNGRKEYI
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Known secondary structure (DSSP)

SSSTT
TT
SS
SSSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence QVTNQNERMTENNDVLTGNLYPSLFTDDPTLSAIAPTLAKIARLMKPTTSLTPDDRAIAAKFPRFKDSAH
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Known secondary structure (DSSP)


SSSS




S
TTSSS
SSSS
TTTSTTTSTTS

S


TTT



TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LNPYSSLNIGGRTQHSVTYTRMYDAIEEMFNLILRAFASSFAQRPRAGVTQLKSLLTQLADPLCLALDGH
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Known secondary structure (DSSP)


S

S
SSS






SS

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence VYHLYNVMANMMQNFIPNTDGQFHSFRACSYAVKDGGNIYRVVQNGDELNESLLIDTAIVWGLLGNTDSS
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Known secondary structure (DSSP) TSSS

S



SSSSS





SS
SS

SS


TTS
B
STT
 .........710.........720.........730.........740.........750.........760.........770
Sequence YGNAIGATGTANVPTKVQPVIPTPDNFITPTIHLKTSIDAICSVEGILLLILSRQTTIPGYEDELNKLRT
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Known secondary structure (DSSP) TTSS
SSS










STTTTSSSTT

SS
SST
 .........780.........790.........800.........810.........820.........830.........840
Sequence GISQPKVTERQYRRARESIKNMLGSGDYNVAPLHFLLHTEHRSTKLSKPLIRRVLDNVVQPYVANLDPAE
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Known secondary structure (DSSP) TS
SSS






B

SS

B





SS
TT



TTTS
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FENTPQLIENSNMTRLQIALKMLTGDMDDIVKGLILHKRACAKFDVYETLTIPTDVKTIVLTMQHISTQT
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Known secondary structure (DSSP)
SSS


S
TSTT




B


S

SS





SSS

TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence QNNMVYYVFLIDGVKILAEDIKNVNFQIDITGIWPEYVITLLLRAINNGFNTYVSMPNILYKPTITADVR
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Known secondary structure (DSSP) SSS
SSSS
TT




S
S


SSS
S


GG
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QFMNTTKAETLLISNKSIVHEIMFFDNALQPKMSSDTLALSEAVYRTIWNSSIITQRISARGLMNLEDAR
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Known secondary structure (DSSP) G





SS
S





TT




S









B


S


SS



SSSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PPEAKISHQSELDMGKIDETSGEPIYTSGLQKMQSSKVSMANVVLSAGSDVIRQAAIKYNVVRTQEIILF
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Known secondary structure (DSSP)
TT




GGGG




BTTTB



SSSS
TTTS



SB



S




SS
SS

 .
Sequence E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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