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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6djqA_

Fold library idPDB HeaderMoleculeTitle
c6djqA_3.10PDB header: hydrolaseChain: A: PDB Molecule: vps1 gtpase-bse;


Added to library: Sat Aug 25 08:39:28 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AQPGGISDPNLIKLVNKLQDVFTTVGVNNPIDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGQGIVTRRP
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Known secondary structure (DSSP)

SSSTT
TTTT







BTTSSSS

S


SSS


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LVLQLINRQSAANLDEWGEFLHLPGQKFYDFNKIRDEINRETEAKVGRNAGISPAPINLRIYSPHVLNLT
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Known secondary structure (DSSP)





SS
SSSTT

B

TTTT





TTS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LVDLPGLTRVPVGDQPRDIERQIRDMILKYIQKPNAIILAVTAANVDLANSDGLKLAREVDPEGQRTIGV
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Known secondary structure (DSSP)


B
SS

TT

TTSSSSTTS
GGG

TT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LTKVDLMDEGTDVVDILAGRIIPLRLGYVPVVNRGQRDIDNKKPITAALEAEKAFFENHKAYRNKSAYCG
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Known secondary structure (DSSP)
GGGS
TT

STTSSS

TT





TT

STTTGGGGGG
S
 .........290.........300.........310.........320.........330.........340
Sequence TPYLARKLNLILMMHIKQTLPDIKQRISSSLQKYQQELRRRKECQQMVESLQRAAEIVSQ
Predicted secondary structure
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Known secondary structure (DSSP) TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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