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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6dgvA_

Fold library idPDB HeaderMoleculeTitle
c6dgvA_2.80PDB header: fluorescent proteinChain: A: PDB Molecule: fluorescent gaba sensor precursor;


Added to library: Sat Apr 6 08:30:31 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ESINFVSWGGSTQDAQKQAWADPFSKASGITVVQDGPTDYGKLKAMVESGNVQWDVVDVEADFALRAAAE
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Known secondary structure (DSSP)



TS




S



ST
 .........80.........90.........100.........110.........120.........130.........140
Sequence GLLEPLDFSVIQRDKIDPRFVSDHGVGSFFFSFVLGYNEGGGGASKPQDWTALFDTKTYPGKRALYKWPS
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Known secondary structure (DSSP) T
B



TTTS
GGGB
GGGTTTTT

SS


SSSTTS
TTTS
S

SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PGVLELALLADGVPADKLYPLDLDRAFKKLDTIKKDIVWWGGGAQSQQLLASGEVSMGQFWNGRIHALQE
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Known secondary structure (DSSP) SSTT

GGG

S

TTGGGSSSSS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence DGAPVGVSWKQNLVMADILVVPKGTKNKAAAMKFLASASSAKGQDDFSNLTAYAPVNIDSVQRLDLANVY
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Known secondary structure (DSSP) TT


BTT
S
TS

B

BTTS


SSTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence ITADKQKNGIMANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSVLSKDPNEKRDHMVLL
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Known secondary structure (DSSP) GGGTBTTS
SSSS





S

TT

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence EFVTAAGITLGMDELYKGGMSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLKFICTTG
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Known secondary structure (DSSP) S



TTSS
S



SGGGGGSS
TTGGGTTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence KLPVPWPTLVTTLVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGTYKTRAEVKFEGDTLVNRIE
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Known secondary structure (DSSP) S
SS
GGGGTTT

GGGSB

GGGGGG
TTTT
TTS
TT
 .........500.........510.........520.........530.........540.........550...
Sequence LKGIDFKEDGNILGHKLEYNFNANLAPNLPTAYVKDQITLDFAYWAKNGPAIATRWNEWLVKL
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Known secondary structure (DSSP) S

TTSTTTTT
B
SS
GGGTS

SGGG
GGG




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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