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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6dgiA_

Fold library idPDB HeaderMoleculeTitle
c6dgiA_2.30PDB header: ligaseChain: A: PDB Molecule: d-alanine--d-alanine ligase;


Added to library: Sat Jun 2 08:33:58 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AXTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEXKKEGWFSEQGALVYLDTNSATLNSD
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Known secondary structure (DSSP)




SSTTTTSTTTTTT

TTTT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence KASYPIDFVVPCIHGFPGETGDIQSXLELAGIPYLGCGPEASANSFNKITSKLWYDALDIPNTPYLFLTQ
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Known secondary structure (DSSP) S

S
SSTTTTTTT

BSS

STT





S
 .........150.........160.........170.........180.........190.........200.........210
Sequence NTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEVSA
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Known secondary structure (DSSP)
SSSTT

SSTT
SGGGTT
SS



 .........220.........230.........240.........250.........260.........270.........280
Sequence YEXNGKLYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAERVFIHXKLRHLSR
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Known secondary structure (DSSP) TT





TTT

GGGGG
TT


SS

S

TT

S
 .........290.........300.........310.........320.........330...
Sequence IDFFLTQEGQIYLNEVNTFPGXTPISXFPKXLEHNGHRFSEFLVQCVTNTLVN
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Known secondary structure (DSSP)
TTS
SS


STTSTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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