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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6dcfD_

Fold library idPDB HeaderMoleculeTitle
c6dcfD_3.45PDB header: transcription/dna/antibioticChain: D: PDB Molecule: dna-directed rna polymerase subunit beta';


Added to library: Sat Sep 8 08:39:37 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKG
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Known secondary structure (DSSP)

S

S






SSB

B


B
TTT

B
TTBTT
TTTT

SSTT

SSSS

STTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence IICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVITSVDDE
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Known secondary structure (DSSP)
B
TTT

B
S
GGGGGT


SSSS
T

TTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence MRHNELSTLEAEMAVEKKAVEDQRDADLEARAQKLEADLAELEAEGAKSDVRRKVRDSGEREMRQLRDRA
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Known secondary structure (DSSP) SS

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence QRELDRLDEIWNTFTKLAPKQLIVDEVLYRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIR
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Known secondary structure (DSSP) T

TT


SSSTTS
S




S
 .........290.........300.........310.........320.........330.........340.........350
Sequence SGKGQKKLRALKRLKVVAAFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNN
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Known secondary structure (DSSP)


SSS

GGGG

GGGS

GGG

 .........360.........370.........380.........390.........400.........410.........420
Sequence RLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRV
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Known secondary structure (DSSP) TT

STTSSSS

B
TTS
B


T
SSS


STT



 .........430.........440.........450.........460.........470.........480.........490
Sequence DYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQRPQVWDVLEEVIA
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Known secondary structure (DSSP) SS
TTS
TTTSTTSSSTT
GGGT
 .........500.........510.........520.........530.........540.........550.........560
Sequence EHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILMLSS
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Known secondary structure (DSSP) T


SS

SGGGSSSS
SSTT

SSS



STSBTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence NNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQAATKDAPEQGVYSSPAEAIMAMDRGALSVRAK
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Known secondary structure (DSSP) T

B
TTT

BS



TT


TT
TT





SSS

SSSSTTT

TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence IKVRLTELRPPTDLEAQLFENGWKPGDAWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAER
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Known secondary structure (DSSP)
SSS


T
S


SS



S
TTS



S


 .........710.........720.........730.........740.........750.........760.........770
Sequence FPMIVVAQTVDKLKDAGFYWATRSGVTVSMADVLVQKQEILERHEAEADAIERKYQRGALNHTERNESLV
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Known secondary structure (DSSP) S
TT



STTT


TTTTS
TTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence KIWQDATEEVGKALEEFYPADNPIITIVKSGATADSGYLTRRLVDVSQDVIVREHDCETERGINVTLAER
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Known secondary structure (DSSP) SS
TT
T


TTT

S











 .........850.........860.........870.........880.........890.........900.........910
Sequence GRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVKVRSVLTCTSATGVCAMCYG
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Known secondary structure (DSSP)


TTTTT

BSS

TTS
S
SS



T




TTS


SSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence RSMATGKLVDIGEAVGIVAAQSIGEPGTGGLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIV
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Known secondary structure (DSSP) B
TTTSSB

SS

GGG


TT


SS
B
SS

SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PDDGGEEVVYDKLSKRQRLRVIGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQEV
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Known secondary structure (DSSP) SS

S

TTS
B
B




B

TT

TT
B
BSS

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence YRAQGVSIHDKHIEVIVRQMLRRVTIIDSEFLPGSLTERAEFEAENAGRPVLMGITKASLATDSWLSAAS
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Known secondary structure (DSSP) TT



TTTT





S

T






TSS
 .........1130.........1140.........1150.........1160.........1170.......
Sequence FQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTGISRYRNIQVQPTEEARAAE
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Known secondary structure (DSSP) S
TT



ST


SSGGGST








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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