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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6d73C_

Fold library idPDB HeaderMoleculeTitle
c6d73C_3.80PDB header: transport proteinChain: C: PDB Molecule: transient receptor potential cation channel, subfamily m;


Added to library: Sat May 18 08:27:22 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LASWIKENIKKKEWDKHRHVRETPTDAFGDISFGGLGQKTGKYVRVSSDTSCENLYQLMTEQWKLRSPNL
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Known secondary structure (DSSP)






TTTTT







SSSSS

SS

S




S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LISVTGGAKNFYIKTHLKDKFRRGLIKVAQTTGAWILTGGTHAGVMKHVGMAVRDYTLSSGSMEGQIVVI
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Known secondary structure (DSSP)


SS




TT
SBSSSTTS


SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence GVAPWGVIHNRSTLIHPEGRFPAYYSLDEQGQGRLSCLDINHTHFLLVDDGTQGHYGVEIELRARLEKLI
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Known secondary structure (DSSP) TTTBS

TTS

S

SS


S


SS
B
B
SS
S
S
SS
STTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SKLSLGNRESGVTIPVVCVVLDGGPGTLNTIYNSMLNHTPCVVLEGSGRLADVIAHVASVPVSKVTMALI
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Known secondary structure (DSSP) SB
TT

SS
B

SS

TS


SSSSSSSSSSTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NRLLKRFFMQEYKNFTELQIIEWTKKIQDILRMPHLLTVFRIDEDKNYDVDVAILQALLKASRSDEHAGR
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Known secondary structure (DSSP) TT
TT
T
TTT

SS

SS



SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence HCWERQLELAVAWNRVDIAESEIFTEESQWTSSDLHPAMFSALVGDKPEFVRLLLENGVCVREFLEREET
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Known secondary structure (DSSP)
T
TS
TT



TT
TTT

S
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence LCELYSHLPSCFFLRKLAKRVQCLSHVSEEVRHLLGSFTQPLYIASRYKDTVWDPGRDLFLWAVVQNNRE
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Known secondary structure (DSSP) T


S



TTS

SS
SS







T
 .........500.........510.........520.........530.........540.........550.........560
Sequence LAEIGWEQCRDCIAAALAASKILRKLAQESGEDDSEEATEMLELANHYEKQAIGVFSECHSWDAQRAQKL
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Known secondary structure (DSSP)
SST

TT

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence LIRISPSWGRSTCLWLALEAHDKSFIAHSGVQALLTQIWCGELSVDNPHWKVLLCMIFFPLIYTGFLTFR
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Known secondary structure (DSSP) B
BSSSSSB
TT
SSSTTB
S
S
SGGGGGSS
S
B
 .........640.........650.........660.........670.........680.........690.........700
Sequence RDEDIQRQAERTEQCSSRLMSFLKSPQVKFYWNIASYFGFLWLFAVVLMIDFQTSPSWRELLLYVWLTSL
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Known secondary structure (DSSP)

T
T


SS

 .........710.........720.........730.........740.........750.........760.........770
Sequence VCEEIRQLYHDFDGSGFRRKAKMYIKDLWNILDVLSIVLFIAGLICRLQASDTVFYIGKVILCIDFIIFC
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Known secondary structure (DSSP) TTS

STTTS
SSSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LRLMAIFSISRTLGPKIIIVRRMMLDLFFFMFLLSIWVVAYGVAKQGILIENEERLNWIIRGAVYEPYIT
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Known secondary structure (DSSP) GGGSTTSSTTT
S



S
 .........850.........860.........870.........880.........890.........900.........910
Sequence IFGNFPTNIDNTLFDISSCSVNASDPLKPKCPMLNADNTPVFPEWLTIMMLCVYLLFANILLLNLLIAIF
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Known secondary structure (DSSP) SS
GGGSSS

STTS

TTTS
SS


S


B
SSS
BSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence NYTFQEVQDNTDTIWKFQRYELIKEYHSRPALPPPFILLSHLILFIRGVFLRHKNFRQELEQTEEEELLS
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Known secondary structure (DSSP) SSS
SS



TTT
B


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence WEAYMKDNYLASTRQDESQSVEHRIHDTAEKVGAMSELLEREQEMVXXXXXXXXXXXXXXXXXXXXXXDE
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Known secondary structure (DSSP) TSTT

T


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EAPHMFARQLQYPDSTVRRFPVPEEKVSWEVNFSPYQPPVYNQKHRNPGGRTGIRGKGALNTLGPNHILH
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Known secondary structure (DSSP)



SSSSSS
SSS
SS





SSSS

S












TT


S

S
TTSSSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence PIFTRWRDKVLEFLAVWRWALLGGPALAQVLERILGKKLNEGEEVYKGYVDDSRNTDNAWVETSIITLHC
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Known secondary structure (DSSP)



B


B




T





TT

SS
 .........1200.........1210.........1220.......
Sequence DKNTMADLNHMVELQWREVSSDACRCSYQREALRQIA
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Known secondary structure (DSSP)




TTTTS






S

SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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