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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6cipD_

Fold library idPDB HeaderMoleculeTitle
c6cipD_3.19PDB header: oxidoreductaseChain: D: PDB Molecule: pyruvate-ferredoxin oxidoreductase;


Added to library: Sat Mar 31 08:36:59 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PKQTLDGNTAAAHVAYAMSEVATIYPITPSSPMAEIADEWAAHGRKNIFGKTLQVAEMQSEAGAAGAVHG
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Known secondary structure (DSSP)

S


TTTTT
B
TTSSB

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SLAAGALTTTFTASQGLLLMIPNMYKIAGELLPCVFHVAARALSTHALSIFGDHADVMAARQTGFAMLSS
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Known secondary structure (DSSP) T


TT






SSS


S

STTTTSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence ASVQEVMDLALVAHLATLKARVPFVHFFDGFRTSHEVQKIDVIEYEDMAKLVDWDAIRAFRQRALNPEHP
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Known secondary structure (DSSP)
S


TTTTTS



TTS
TS

TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence HQRGTAQNPDIYFQSREAANPYYLATPGIVAQVMEQVAGLTGRHYHLFDYAGAPDAERVIVSMGSSCEVI
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Known secondary structure (DSSP)


S



TTTTTS



S
TT
STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence EETVNYLVEKGEKVGLIKVRLFRPFSAEHFLKVLPASVKRIAVLDRTKEPGSLGEPLYEDVQTVLAEHGK
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Known secondary structure (DSSP) TT


S

TS
TT

S


TTSSS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence NILVVGGRYGLGSKEFNPSMVKAVFDNLAATTPKNKFTVGITDDVTHTSLEIKEHIDTSPKGTFRCKFFG
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Known secondary structure (DSSP)


TTS



SSS


SSS

TTT

B










TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LGSDGTVGANKNSIKIIGDHTDMYAQGYFVYDSKKSGGVTISHLRFGKQPIQSAYLIDQADLIACHNPSY
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Known secondary structure (DSSP) TTSSSS


SSSSS
SS




S

SS

GGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence VGRYNLLEGIKPGGIFLLNSTWSAEEMDSRLPADMKRTIATKKLKFYNIDAVKIAQEIGLGSRINVIMQT
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Known secondary structure (DSSP) TTTS
TTTT
S

TTTS
TT

T
TT

 .........570.........580.........590.........600.........610.........620.........630
Sequence AFFKIANVIPVDEAIKYIKDSIVKTYGKKGDKILNMNFAAVDRALEALEEIKYPASWADAVDETEEPEFI
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Known secondary structure (DSSP)
SS
SSS





GGGGG







 .........640.........650.........660.........670.........680.........690.........700
Sequence QKVLRPINALKGDELPVSTFTPDGVFPVGTTKYEKRGIAVNIPQWQPENCIQCNQCSLVCPHAAIRPYLA
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Known secondary structure (DSSP) TTT
GGGS
GGGS
TT



S

GGGT




S
TTT





TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence KPADLAGAPETFVTKDAIGKEAAGLKFRIQVSPLDCTGCGNCADVCPAKVKALTMVPLEEVTAVEEANYN
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Known secondary structure (DSSP)
GGGGTT

TT




SSTTTT

TTT






SSS
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence FAEQLPEVKVNFNPATVKGSQFRQPLLEFSGACAGCGETPYVKLVTQLFGDRMIIANATGCSSIWGGSAP
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Known secondary structure (DSSP) T








TTSTTS

SB
S
S

TT
SSGGG
SSTTSBTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence ACPYTVNRQGHGPAWASSLFEDNAEFGYGMALAVAKRQDELATAISKALEAPVSAAFKAACEGWLAGKDD
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Known secondary structure (DSSP) B

B


TTS





SS
TSS

STTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ADRSREYGDRIKALLPGEISQASGEVKDLLLDIDRQKDYLTKKSIWIIGGDGWAYDIGYGGLDHVLASGA
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Known secondary structure (DSSP) T

TTGGGSS

TTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NVNVLVLDTEVYSNTGGQSSKATQTGAVARFAAGGKFTKKKDLGLMAMSYGYVYVASVAMGASHSQLMKA
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Known secondary structure (DSSP) S

SSBTTTT
B

TTS
TT


BT
TT


S



TTSSS
TTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LIEAEKYDGPSLIIAYAPCINHGINMTYSQREAKKAVEAGYWPLYRYNPQLAQEGKNPFILDYKTPTASF
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Known secondary structure (DSSP) SSS



GGG
S
GGGTTSS


TTS
SS




S
 .........1130.........1140.........1150.........1160....
Sequence RDFLMGEIRYTSLKKQFPEKAEQLFAKAEADAKARLEQYKKLAE
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Known secondary structure (DSSP) TTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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